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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-8
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:834
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1856393 OVLP-000925-40569 C/T 4 rs184617 0 1 58485416 NT_032977.10 57899428
ss1856391 OVLP-000925-38315 A/G 4 rs614305 0 1 71580988 NT_032977.10 70995000
ss1856373 OVLP-000925-12014 A/C 4 rs1237196 0 1 164890921 NT_004487.20 21706334
ss1856392 OVLP-000925-39674 C/G 4 rs184012 1 1 165423709 NT_004487.20 22239122
ss1856377 OVLP-000925-12926 A/C 4 rs811875 0 11 7839536 NT_009237.19 7779536
ss1856375 OVLP-000925-12920 A/C 4 rs184519 1 11 7871437 NT_009237.19 7811437
ss1856381 OVLP-000925-16964 G/T 4 rs184519 0 11 7871437 NT_009237.19 7811437
ss1856376 OVLP-000925-12922 G/T 4 rs184520 1 11 7876587 NT_009237.19 7816587
ss1856382 OVLP-000925-16967 A/C 4 rs184520 0 11 7876587 NT_009237.19 7816587
ss1856371 OVLP-000925-8940 A/G 4 rs184057 1 11 85513450 NT_167190.2 30988376
ss1856372 OVLP-000925-11200 C/T 4 rs184057 0 11 85513450 NT_167190.2 30988376
ss1856385 OVLP-000925-28123 G/T 4 rs864536 0 12 127548784 NT_029419.13 90313532
ss1856384 OVLP-000925-21662 C/G 4 rs184692 0 12 127581172 NT_029419.13 90345920
ss1856387 OVLP-000925-31621 C/G 4 rs184692 0 12 127581172 NT_029419.13 90345920
ss1856394 OVLP-000925-40580 C/G 4 rs184692 0 12 127581172 NT_029419.13 90345920
ss1856389 OVLP-000925-35381 G/T 4 rs864534 0 12 127590783 NT_029419.13 90355531
ss1856367 OVLP-000925-5309 A/G 4 rs865045 0 14 85018605 NT_026437.13 66795082
ss1856370 OVLP-000925-8394 C/T 4 rs183659 0 16 9368094 NT_010393.17 9358094
ss1856369 OVLP-000925-8352 C/T 4 rs183657 0 16 9422233 NT_010393.17 9412233
ss1856374 OVLP-000925-12481 A/C 4 rs183137 0 16 9431557 NT_010393.17 9421557
ss1856378 OVLP-000925-13587 C/G 4 rs182626 0 16 9634095 NT_010393.17 9624095
ss1856386 OVLP-000925-28529 A/G 4 rs1071504 1 16 10186159 NT_010393.17 10176159
ss1856388 OVLP-000925-33610 C/T 4 rs1071504 0 16 10186159 NT_010393.17 10176159
ss1856366 OVLP-000925-3894 G/T 4 rs184344 0 17 67780606 NT_010783.16 40844626
ss1856390 OVLP-000925-37436 A/C 4 rs353136 0 2 165286690 NT_005403.18 70790675
ss1856395 OVLP-000925-41595 A/C 4 rs28110 0 5 11492280 NT_006576.17 11482280
ss1856379 OVLP-000925-14114 A/G 4 rs812001 0 5 65410112 NT_034772.7 15300305
ss1856383 OVLP-000925-18696 A/G 4 rs812001 0 5 65410112 NT_034772.7 15300305
ss1856368 OVLP-000925-5740 C/T 4 rs152882 0 5 111407477 NT_034772.7 61297670
ss1856380 OVLP-000925-14126 C/G 4 rs864346 0 6 165600054 NT_025741.16 105370120
30 of 834 subsnp's starting at ss1856393. ss# starting at ss

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