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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-10
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1000
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1857257 OVLP-000925-19339 A/G 4 rs1237560 0 1 165061676 NT_004487.20 21877089
ss1857256 OVLP-000925-16962 A/C 4 rs812390 0 11 7755520 NT_009237.19 7695520
ss1857251 OVLP-000925-8911 C/T 4 rs1237559 0 11 85429507 NT_167190.2 30904433
ss1857267 OVLP-000925-26755 C/T 4 rs1237565 0 12 112181972 NT_029419.13 74946720
ss1857255 OVLP-000925-15947 C/T 4 rs186961 0 12 127441930 NT_029419.13 90206678
ss1857259 OVLP-000925-21665 C/T 4 rs617419 0 12 127512607 NT_029419.13 90277355
ss1857260 OVLP-000925-21670 A/C 4 rs476968 0 12 127516404 NT_029419.13 90281152
ss1857275 OVLP-000925-31707 C/G 4 rs186958 0 12 127528314 NT_029419.13 90293062
ss1857262 OVLP-000925-23997 A/C 4 rs186959 0 12 127561898 NT_029419.13 90326646
ss1857274 OVLP-000925-31687 A/C 4 rs186959 0 12 127561898 NT_029419.13 90326646
ss1857277 OVLP-000925-35309 C/T 4 rs345691 0 12 127584685 NT_029419.13 90349433
ss1857273 OVLP-000925-31610 A/G 4 rs186960 0 12 127585454 NT_029419.13 90350202
ss1857278 OVLP-000925-35387 G/T 4 rs865149 0 12 127590246 NT_029419.13 90354994
ss1857250 OVLP-000925-8405 A/G 4 rs185111 0 16 9379171 NT_010393.17 9369171
ss1857254 OVLP-000925-13599 G/T 4 rs184353 0 16 9643594 NT_010393.17 9633594
ss1857258 OVLP-000925-20723 C/T 4 rs865101 0 16 10010386 NT_010393.17 10000386
ss1857261 OVLP-000925-23883 G/T 4 rs1237561 0 2 165156377 NT_005403.18 70660362
ss1857249 OVLP-000925-6455 C/G 4 rs1237558 0 3 108343004 NT_005612.17 14637430
ss1857264 OVLP-000925-25126 G/T 4 rs149513 0 5 65582248 NT_034772.7 15472441
ss1857270 OVLP-000925-30786 G/T 4 rs149513 0 5 65582248 NT_034772.7 15472441
ss1857269 OVLP-000925-30695 A/G 4 rs154943 0 5 65605175 NT_034772.7 15495368
ss1857268 OVLP-000925-28546 A/C 4 rs154939 0 5 65606485 NT_034772.7 15496678
ss1857271 OVLP-000925-30845 G/T 4 rs187104 0 5 65645248 NT_034772.7 15535441
ss1857272 OVLP-000925-30894 G/T 4 rs185454 0 5 65650367 NT_034772.7 15540560
ss1857253 OVLP-000925-13041 A/C 4 rs31619 0 5 111489430 NT_034772.7 61379623
ss1857265 OVLP-000925-26055 A/G 4 rs1145123 1 5 111690901 NT_034772.7 61581094
ss1857266 OVLP-000925-26089 G/T 4 rs1213553 0 5 111713211 NT_034772.7 61603404
ss1857252 OVLP-000925-12175 A/G 4 rs184937 0 5 129896860 NT_034772.7 79787053
ss1857263 OVLP-000925-24544 A/T 4 rs1237563 1 6 77493384 NT_025741.16 17263450
ss1857276 OVLP-000925-32465 A/G 4 rs554026 0 7 84253971 NT_007933.16 21747192
30 of 1000 subsnp's starting at ss1857257. ss# starting at ss

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