NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-14
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:245
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1859412 OVLP-000925-81887 C/T 4 rs190250 0 1 4564719 NT_032977.10 3978731
ss1859414 OVLP-000925-86248 A/G 4 rs189538 0 1 4590243 NT_032977.10 4004255
ss1859400 OVLP-000925-43901 G/T 4 rs865387 0 1 58434250 NT_032977.10 57848262
ss1859405 OVLP-000925-45261 A/G 4 rs188196 0 1 165415384 NT_004487.20 22230797
ss1859402 OVLP-000925-45178 A/G 4 rs188195 0 1 165440745 NT_004487.20 22256158
ss1859403 OVLP-000925-45183 G/T 4 rs188230 0 1 165442174 NT_004487.20 22257587
ss1859404 OVLP-000925-45215 A/C 4 rs188231 0 1 165492716 NT_004487.20 22308129
ss1859421 OVLP-000925-97662 C/G 4 rs189958 0 1 167851350 NT_004487.20 24666763
ss1859417 OVLP-000925-87727 A/G 4 rs203789 0 1 167940382 NT_004487.20 24755795
ss1859407 OVLP-000925-60054 A/C 4 rs684113 1 11 85676672 NT_167190.2 31151598
ss1859406 OVLP-000925-60045 G/T 4 rs1144762 0 11 85735758 NT_167190.2 31210684
ss1859419 OVLP-000925-90910 A/G 4 rs813321 0 12 10730823 NT_009714.18 3646173
ss1859416 OVLP-000925-87623 C/T 4 rs646494 0 12 10821949 NT_009714.18 3737299
ss1859415 OVLP-000925-87605 C/T 4 rs592864 1 12 10827717 NT_009714.18 3743067
ss1859394 OVLP-000925-12483 C/T 4 rs531909 0 16 9433129 NT_010393.17 9423129
ss1859395 OVLP-000925-13621 A/T 4 rs865939 0 16 9657349 NT_010393.17 9647349
ss1859411 OVLP-000925-81451 C/T 4 rs190068 0 21 36410628 NT_011512.12 23444820
ss1859409 OVLP-000925-70679 A/G 4 rs189951 0 3 100074369 NT_005612.17 6368795
ss1859418 OVLP-000925-88119 A/C 4 rs187597 1 5 11276696 NT_006576.17 11266696
ss1859422 OVLP-000925-99043 A/C 4 rs187597 1 5 11276696 NT_006576.17 11266696
ss1859399 OVLP-000925-43778 G/T 4 rs187104 0 5 65645248 NT_034772.7 15535441
ss1859420 OVLP-000925-94637 C/T 4 rs188522 0 5 120496030 NT_034772.7 70386223
ss1859410 OVLP-000925-79157 A/G 4 rs189830 0 5 127477758 NT_034772.7 77367951
ss1859408 OVLP-000925-62812 A/G 4 rs189833 0 5 127681179 NT_034772.7 77571372
ss1859396 OVLP-000925-19938 C/T 4 rs187410 0 5 129668315 NT_034772.7 79558508
ss1859423 OVLP-000925-101078 G/T 4 rs189847 0 5 138607685 NT_034772.7 88497878
ss1859401 OVLP-000925-44431 C/T 4 rs694916 0 5 143553337 NT_029289.12 4099678
ss1859398 OVLP-000925-38934 A/C 4 rs600642 0 7 84318349 NT_007933.16 21811570
ss1859397 OVLP-000925-38932 C/T 4 rs542078 0 7 84347374 NT_007933.16 21840595
ss1859413 OVLP-000925-82296 C/T 4 rs865909 0 8 132925723 NT_008046.17 47211501
30 of 245 subsnp's starting at ss1859412. ss# starting at ss

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement