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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-15
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:664
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1859668 OVLP-000925-49325 C/T 4 rs1238429 0 1 58350980 NT_032977.10 57764992
ss1859662 OVLP-000925-39634 C/T 4 rs190770 0 1 165402279 NT_004487.20 22217692
ss1859649 OVLP-000925-12931 C/G 4 rs191306 0 11 7854009 NT_009237.19 7794009
ss1859650 OVLP-000925-12933 C/T 4 rs191307 0 11 7854198 NT_009237.19 7794198
ss1859651 OVLP-000925-15469 G/T 4 rs1151252 0 11 85572768 NT_167190.2 31047694
ss1859652 OVLP-000925-17816 G/T 4 rs1151252 0 11 85572768 NT_167190.2 31047694
ss1859664 OVLP-000925-44981 C/T 4 rs675513 0 11 85730050 NT_167190.2 31204976
ss1859665 OVLP-000925-44995 A/C 4 rs583992 1 11 85747160 NT_167190.2 31222086
ss1859666 OVLP-000925-48697 C/T 4 rs707323 0 11 91645684 NT_033899.9 3642788
ss1859654 OVLP-000925-21683 C/G 4 rs477235 0 12 127428660 NT_029419.13 90193408
ss1859656 OVLP-000925-28089 C/T 4 rs866327 0 12 127507242 NT_029419.13 90271990
ss1859653 OVLP-000925-21671 G/T 4 rs866330 0 12 127522210 NT_029419.13 90286958
ss1859658 OVLP-000925-31623 C/T 4 rs191511 0 12 127581055 NT_029419.13 90345803
ss1859663 OVLP-000925-40582 C/T 4 rs191511 0 12 127581055 NT_029419.13 90345803
ss1859660 OVLP-000925-35308 C/T 4 rs189807 0 12 127584833 NT_029419.13 90349581
ss1859661 OVLP-000925-35386 C/G 4 rs866323 0 12 127590284 NT_029419.13 90355032
ss1859641 OVLP-000925-5291 A/G 4 rs866489 0 14 85018455 NT_026437.13 66794932
ss1859643 OVLP-000925-8356 C/T 4 rs190345 0 16 9422790 NT_010393.17 9412790
ss1859657 OVLP-000925-28527 C/T 4 rs1071562 0 16 10190430 NT_010393.17 10180430
ss1859659 OVLP-000925-33597 C/T 4 rs1071562 0 16 10190430 NT_010393.17 10180430
ss1859639 OVLP-000925-3900 A/T 4 rs191128 0 17 67723371 NT_010783.16 40787391
ss1859667 OVLP-000925-49054 C/T 4 rs32604 0 5 11484950 NT_006576.17 11474950
ss1859640 OVLP-000925-3935 C/T 4 rs190543 0 5 65096106 NT_034772.7 14986299
ss1859642 OVLP-000925-5765 C/T 4 rs190543 0 5 65096106 NT_034772.7 14986299
ss1859655 OVLP-000925-25972 A/G 4 rs27933 0 5 111676092 NT_034772.7 61566285
ss1859648 OVLP-000925-12181 C/T 4 rs190284 0 5 129894231 NT_034772.7 79784424
ss1859647 OVLP-000925-12176 A/T 4 rs190283 0 5 129896795 NT_034772.7 79786988
ss1859644 OVLP-000925-9257 A/G 4 rs1238420 0 9 122381866 NT_008470.20 54161314
ss1859646 OVLP-000925-11467 A/G 4 rs1238422 0 9 122457012 NT_008470.20 54236460
ss1859645 OVLP-000925-11452 C/T 4 rs1213309 1 9 122539748 NT_008470.20 54319196
30 of 664 subsnp's starting at ss1859668. ss# starting at ss

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