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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-16
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:36
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1860303 OVLP-000925-51100 A/G 4 rs191746 0 1 165543879 NT_004487.20 22359292
ss1860323 OVLP-000925-546587 A/G 4 rs513633 0 1 225607131 NT_167186.2 1998196
ss1860313 OVLP-000925-233188 A/C 4 rs191735 0 1 240915510 NT_167186.2 17306575
ss1860312 OVLP-000925-134536 A/G 4 rs191754 0 11 13743466 NT_009237.19 13683466
ss1860327 OVLP-000925-570984 A/C 4 rs567494 0 11 61185982 NT_167190.2 6660908
ss1860319 OVLP-000925-379010 A/G 4 rs504837 0 11 75693940 NT_167190.2 21168866
ss1860304 OVLP-000925-60050 G/T 4 rs583992 0 11 85747160 NT_167190.2 31222086
ss1860314 OVLP-000925-234337 C/T 4 rs1312479 0 11 100491502 NT_033899.9 12488606
ss1860316 OVLP-000925-310354 C/T 4 rs566351 0 11 101114283 NT_033899.9 13111387
ss1860317 OVLP-000925-344453 A/T 4 rs594358 0 11 122134417 NT_033899.9 34131521
ss1860308 OVLP-000925-80851 A/C 4 rs866408 0 12 127841576 NT_029419.13 90606324
ss1860332 OVLP-000925-694017 C/T 4 rs813566 0 13 60204844 NT_024524.15 41796738
ss1860324 OVLP-000925-546847 G/T 4 rs168006 0 17 69356071 NT_010783.16 42420091
ss1860328 OVLP-000925-580608 A/G 4 rs678742 0 18 3522078 NT_010859.15 3512078
ss1860325 OVLP-000925-556572 A/G 4 rs1238719 0 18 52416375 NT_010966.15 31505169
ss1860322 OVLP-000925-520724 A/T 4 rs973017 0 18 52550348 NT_010966.15 31639142
ss1860321 OVLP-000925-453304 A/T 4 rs185295 0 3 64192988 NT_022517.19 64182988
ss1860307 OVLP-000925-70690 A/T 4 rs191743 0 3 100074604 NT_005612.17 6369030
ss1860309 OVLP-000925-85141 A/C 4 rs190688 0 3 100284487 NT_005612.17 6578913
ss1860330 OVLP-000925-659513 A/G 4 rs1238724 0 3 131913080 NT_005612.17 38207506
ss1860318 OVLP-000925-359859 A/G 4 rs191771 0 4 59584156 NT_016354.20 662775
ss1860315 OVLP-000925-234962 A/G 4 rs191762 0 4 142762549 NT_016354.20 83841168
ss1860320 OVLP-000925-409150 G/T 4 rs1238715 0 4 152001305 NT_016354.20 93079924
ss1860326 OVLP-000925-561180 A/G 4 rs1238720 0 4 171365087 NT_016354.20 112443706
ss1860306 OVLP-000925-68561 C/T 4 rs42684 0 5 11337298 NT_006576.17 11327298
ss1860311 OVLP-000925-126461 C/G 4 rs190550 0 5 96494076 NT_034772.7 46384269
ss1860331 OVLP-000925-678705 C/T 4 rs866394 0 5 98988139 NT_034772.7 48878332
ss1860310 OVLP-000925-101072 G/T 4 rs191729 0 5 138607752 NT_034772.7 88497945
ss1860305 OVLP-000925-63210 G/T 4 rs149614 0 5 143810837 NT_029289.12 4357178
ss1860329 OVLP-000925-606140 A/T 4 rs191772 0 5 174274651 NT_023133.14 18513327
30 of 36 subsnp's starting at ss1860303. ss# starting at ss

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