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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-4-17
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:214
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1860351 OVLP-000925-65877 A/C 4 rs191593 0 1 4357525 NT_032977.10 3771537
ss1860345 OVLP-000925-45263 G/T 4 rs190800 0 1 165417413 NT_004487.20 22232826
ss1860344 OVLP-000925-45229 A/G 4 rs190798 0 1 165466350 NT_004487.20 22281763
ss1860343 OVLP-000925-45193 A/G 4 rs190801 0 1 165481689 NT_004487.20 22297102
ss1860359 OVLP-000925-86694 A/G 4 rs191852 0 1 167976988 NT_004487.20 24792401
ss1860357 OVLP-000925-85655 C/T 4 rs191847 0 1 168049763 NT_004487.20 24865176
ss1860339 OVLP-000925-8965 A/T 4 rs1238729 0 11 85504056 NT_167190.2 30978982
ss1860354 OVLP-000925-77347 C/T 4 rs675513 0 11 85730050 NT_167190.2 31204976
ss1860360 OVLP-000925-87601 G/T 4 rs620878 0 12 10805131 NT_009714.18 3720481
ss1860348 OVLP-000925-58933 A/G 4 rs1144438 0 12 127634344 NT_029419.13 90399092
ss1860362 OVLP-000925-93181 C/T 4 rs663220 0 18 56533035 NT_010966.15 35621829
ss1860361 OVLP-000925-93035 C/T 4 rs1238735 0 18 56621749 NT_010966.15 35710543
ss1860363 OVLP-000925-93205 A/T 4 rs583293 0 18 56631546 NT_010966.15 35720340
ss1860349 OVLP-000925-62270 G/T 4 rs192051 0 21 21382480 NT_011512.12 8416672
ss1860352 OVLP-000925-70697 A/G 4 rs191864 0 3 100132845 NT_005612.17 6427271
ss1860365 OVLP-000925-103871 G/T 4 rs866460 0 5 11026415 NT_006576.17 11016415
ss1860358 OVLP-000925-85907 C/T 4 rs413043 0 5 11294057 NT_006576.17 11284057
ss1860364 OVLP-000925-99096 C/G 4 rs1238736 0 5 11310823 NT_006576.17 11300823
ss1860353 OVLP-000925-71664 A/G 4 rs28812 0 5 11322164 NT_006576.17 11312164
ss1860340 OVLP-000925-13076 A/C 4 rs185163 0 5 111467032 NT_034772.7 61357225
ss1860341 OVLP-000925-19900 C/T 4 rs25803 0 5 129692920 NT_034772.7 79583113
ss1860366 OVLP-000925-105547 A/G 4 rs866454 0 5 138535565 NT_034772.7 88425758
ss1860355 OVLP-000925-77570 G/T 4 rs666473 0 5 143999794 NT_029289.12 4546135
ss1860342 OVLP-000925-29312 C/T 4 rs190849 0 7 25450805 NT_007819.18 25440805
ss1860368 OVLP-000925-106380 A/G 4 rs813885 0 7 27091055 NT_007819.18 27081055
ss1860350 OVLP-000925-64332 A/G 4 rs866488 0 7 46717628 NT_007819.18 46707628
ss1860346 OVLP-000925-55928 C/T 4 rs1238732 0 7 84434157 NT_007933.16 21927378
ss1860347 OVLP-000925-55967 A/C 4 rs1238733 0 7 84475083 NT_007933.16 21968304
ss1860367 OVLP-000925-105776 A/G 4 rs1238737 0 7 97693218 NT_007933.16 35186439
ss1860356 OVLP-000925-82362 C/T 4 rs866468 0 8 132908076 NT_008046.17 47193854
30 of 214 subsnp's starting at ss1860351. ss# starting at ss

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