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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-5-0
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:76322
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1861108 OVLP-000925-3783 C/T 4 rs710666 0 12 70373912 NT_029419.13 33138660
ss1861107 OVLP-000925-3780 A/G 4 rs1067540 0 12 70377187 NT_029419.13 33141935
ss1861106 OVLP-000925-3779 A/G 4 rs1067539 0 12 70377529 NT_029419.13 33142277
ss1861135 OVLP-000925-3826 A/G 4 rs787940 0 12 70393039 NT_029419.13 33157787
ss1861134 OVLP-000925-3825 A/G 4 rs787939 0 12 70393441 NT_029419.13 33158189
ss1861133 OVLP-000925-3824 C/T 4 rs787938 0 12 70393766 NT_029419.13 33158514
ss1861132 OVLP-000925-3820 A/C 4 rs787937 0 12 70396041 NT_029419.13 33160789
ss1861124 OVLP-000925-3808 A/G 4 rs710653 0 12 70399606 NT_029419.13 33164354
ss1861125 OVLP-000925-3810 A/G 4 rs710651 0 12 70400406 NT_029419.13 33165154
ss1861126 OVLP-000925-3811 C/T 4 rs710650 0 12 70400790 NT_029419.13 33165538
ss1861127 OVLP-000925-3813 C/T 4 rs710649 0 12 70404563 NT_029419.13 33169311
ss1861128 OVLP-000925-3814 A/G 4 rs710648 0 12 70405024 NT_029419.13 33169772
ss1861129 OVLP-000925-3815 A/G 4 rs710647 0 12 70405389 NT_029419.13 33170137
ss1861130 OVLP-000925-3817 A/G 4 rs787935 0 12 70407669 NT_029419.13 33172417
ss1861131 OVLP-000925-3818 A/G 4 rs787936 0 12 70407710 NT_029419.13 33172458
ss1861123 OVLP-000925-3807 A/G 4 rs787934 0 12 70411881 NT_029419.13 33176629
ss1861109 OVLP-000925-3785 A/G 4 rs787931 0 12 70423499 NT_029419.13 33188247
ss1861110 OVLP-000925-3786 G/T 4 rs787932 0 12 70423642 NT_029419.13 33188390
ss1861111 OVLP-000925-3788 A/G 4 rs787933 0 12 70425425 NT_029419.13 33190173
ss1861112 OVLP-000925-3789 C/G 4 rs394571 0 12 70427893 NT_029419.13 33192641
ss1861113 OVLP-000925-3790 A/G 4 rs710646 0 12 70428794 NT_029419.13 33193542
ss1861114 OVLP-000925-3791 A/G 4 rs608607 0 12 70429632 NT_029419.13 33194380
ss1861115 OVLP-000925-3794 A/T 4 rs396096 0 12 70431300 NT_029419.13 33196048
ss1861116 OVLP-000925-3796 G/T 4 rs398702 0 12 70433999 NT_029419.13 33198747
ss1861117 OVLP-000925-3797 G/T 4 rs604837 0 12 70436557 NT_029419.13 33201305
ss1861118 OVLP-000925-3798 G/T 4 rs434483 0 12 70436641 NT_029419.13 33201389
ss1861119 OVLP-000925-3800 C/T 4 rs438847 0 12 70437576 NT_029419.13 33202324
ss1861120 OVLP-000925-3801 C/G 4 rs635461 0 12 70438800 NT_029419.13 33203548
ss1861121 OVLP-000925-3802 A/T 4 rs418023 0 12 70439830 NT_029419.13 33204578
ss1861122 OVLP-000925-3805 G/T 4 rs402325 0 12 70440251 NT_029419.13 33204999
30 of 76322 subsnp's starting at ss1861108. ss# starting at ss

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