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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-5-13
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:77
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1979703 OVLP-000925-13296 A/G 4 rs696606 1 1 16502145 NT_032977.10 15916157
ss1979725 OVLP-000925-236800 A/G 4 rs865848 0 1 94687136 NT_032977.10 94101148
ss1979707 OVLP-000925-51777 A/G 4 rs575280 0 11 116657011 NT_033899.9 28654115
ss1979717 OVLP-000925-119780 A/C 4 rs687740 0 11 117306887 NT_033899.9 29303991
ss1979720 OVLP-000925-177744 G/T 4 rs583669 0 11 117863597 NT_033899.9 29860701
ss1979702 OVLP-000925-11802 A/C 4 rs1271760 0 12 32298279 NT_009714.18 25213629
ss1979728 OVLP-000925-278610 A/G 4 rs345944 0 12 62666562 NT_029419.13 25431310
ss1979724 OVLP-000925-218490 G/T 4 rs1272330 0 12 64654378 NT_029419.13 27419126
ss1979704 OVLP-000925-27640 A/G 4 rs1152956 0 12 69970696 NT_029419.13 32735444
ss1979705 OVLP-000925-29000 A/T 4 rs1272318 0 12 115717355 NT_029419.13 78482103
ss1979716 OVLP-000925-115334 A/G 4 rs223118 0 14 23520395 NT_026437.13 5296872
ss1979723 OVLP-000925-211554 A/G 4 rs189721 0 15 22122291 NT_037852.7 2347037
ss1979710 OVLP-000925-66897 C/T 4 rs813282 0 17 29637912 NT_010783.16 2701932
ss1979726 OVLP-000925-244501 A/C 4 rs1272331 0 18 36286611 NT_010966.15 15375405
ss1979721 OVLP-000925-186314 A/G 4 rs1272328 0 18 62614238 NT_010966.15 41703032
ss1979731 OVLP-000925-283942 G/T 4 rs1272333 0 18 76967212 NT_010966.15 56056006
ss1979708 OVLP-000925-61139 C/T 4 rs189766 0 18 79354694 NT_010966.15 58443488
ss1979729 OVLP-000925-278883 G/T 4 rs187948 0 19 12135341 NT_011295.12 12075341
ss1979709 OVLP-000925-65123 C/T 4 rs1272322 0 3 6829682 NT_022517.19 6819682
ss1979727 OVLP-000925-248710 G/T 4 rs189782 0 4 145033906 NT_016354.20 86112525
ss1979712 OVLP-000925-70157 A/C 4 rs168053 0 5 16389910 NT_006576.17 16379910
ss1979711 OVLP-000925-70101 C/G 4 rs154793 0 5 16416568 NT_006576.17 16406568
ss1979715 OVLP-000925-102612 A/G 4 rs1272325 0 6 102816443 NT_025741.16 42586509
ss1979719 OVLP-000925-170245 G/T 4 rs1272326 0 7 49892102 NT_007819.18 49882102
ss1979714 OVLP-000925-70788 A/G 4 rs1272324 0 8 113084578 NT_008046.17 27370356
ss1979713 OVLP-000925-70787 A/G 4 rs1272323 0 8 113084604 NT_008046.17 27370382
ss1979730 OVLP-000925-281719 C/T 4 rs162200 0 9 99330165 NT_008470.20 31109613
ss1979706 OVLP-000925-29278 A/G 4 N.D. N.D.
ss1979718 OVLP-000925-151162 G/T 4 N.D. N.D.
ss1979722 OVLP-000925-206985 A/G 4 N.D. N.D.
30 of 77 subsnp's starting at ss1979703. ss# starting at ss

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