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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-3-3
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:1404
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss2062952 OVLP-000925-16152 C/T 4 rs169872 0 1 60320574 NT_032977.10 59734586
ss2062951 OVLP-000925-13868 A/G 4 rs860395 0 1 117620835 NT_032977.10 117034847
ss2062953 OVLP-000925-18777 A/T 4 rs170200 0 10 4544962 NT_008705.17 4534962
ss2062954 OVLP-000925-18792 C/G 4 rs170201 0 10 4622968 NT_008705.17 4612968
ss2062949 OVLP-000925-11690 C/T 4 rs1295746 0 14 42111511 NT_026437.13 23887988
ss2062936 OVLP-000925-4825 A/G 4 rs1295743 0 14 42182251 NT_026437.13 23958728
ss2062957 OVLP-000925-21430 C/T 4 rs170456 0 15 25584843 NT_010194.18 2307969
ss2062930 OVLP-000925-2708 A/G 4 rs1295740 0 16 8698200 NT_010393.17 8688200
ss2062931 OVLP-000925-2734 A/T 4 rs1295741 0 16 8717582 NT_010393.17 8707582
ss2062940 OVLP-000925-5406 A/T 4 rs666301 0 16 57373318 NT_010498.16 10992636
ss2062948 OVLP-000925-11314 A/G 4 rs683544 1 16 57374866 NT_010498.16 10994184
ss2062941 OVLP-000925-5413 G/T 4 rs170363 0 16 57375432 NT_010498.16 10994750
ss2062939 OVLP-000925-5371 A/G 4 rs170361 0 16 57380711 NT_010498.16 11000029
ss2062938 OVLP-000925-5365 A/G 4 rs186481 0 16 57387099 NT_010498.16 11006417
ss2062937 OVLP-000925-5342 A/G 4 rs609509 0 16 57396645 NT_010498.16 11015963
ss2062945 OVLP-000925-5530 C/T 4 rs121570 0 16 57421934 NT_010498.16 11041252
ss2062943 OVLP-000925-5496 C/T 4 rs170362 0 16 57425114 NT_010498.16 11044432
ss2062944 OVLP-000925-5500 A/G 4 rs186482 0 16 57426129 NT_010498.16 11045447
ss2062942 OVLP-000925-5444 A/G 4 rs172782 0 16 57453934 NT_010498.16 11073252
ss2062947 OVLP-000925-10790 A/G 4 rs1295744 0 19 15627500 NT_011295.12 15567500
ss2062933 OVLP-000925-4210 A/G 4 rs170846 0 21 44555636 NT_011512.12 31589828
ss2062934 OVLP-000925-4218 A/G 4 rs170847 0 21 44559015 NT_011512.12 31593207
ss2062935 OVLP-000925-4230 C/G 4 rs170848 0 21 44564406 NT_011512.12 31598598
ss2062955 OVLP-000925-19634 C/T 4 rs1295748 0 3 169932738 NT_005612.17 76227164
ss2062946 OVLP-000925-5921 A/G 4 rs1315983 0 3 197742230 NT_005612.17 104036656
ss2062950 OVLP-000925-12818 A/G 4 rs1295747 0 4 77727467 NT_016354.20 18806086
ss2062929 OVLP-000925-1278 A/T 4 rs1148634 0 4 150963200 NT_016354.20 92041819
ss2062958 OVLP-000925-22078 C/T 4 rs168926 0 5 102799703 NT_034772.7 52689896
ss2062932 OVLP-000925-3122 C/T 4 rs255019 0 5 179369343 NT_023133.14 23608019
ss2062956 OVLP-000925-19789 C/G 4 rs218834 0 6 121022026 NT_025741.16 60792092
30 of 1404 subsnp's starting at ss2062952. ss# starting at ss

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