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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-3-7
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:211
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss2070503 OVLP-000925-33076 C/G 4 rs183339 0 1 19337917 NT_032977.10 18751929
ss2070511 OVLP-000925-71409 A/G 4 rs864047 0 1 36957469 NT_032977.10 36371481
ss2070514 OVLP-000925-91928 C/T 4 rs183378 0 1 37082720 NT_032977.10 36496732
ss2070512 OVLP-000925-85209 A/G 4 rs709306 0 1 37107918 NT_032977.10 36521930
ss2070513 OVLP-000925-91900 A/G 4 rs183377 0 1 37176204 NT_032977.10 36590216
ss2070515 OVLP-000925-91951 A/G 4 rs149405 0 1 37186695 NT_032977.10 36600707
ss2070500 OVLP-000925-26550 A/C 4 rs183334 0 1 41146431 NT_032977.10 40560443
ss2070517 OVLP-000925-98907 A/C 4 rs586054 1 1 44115205 NT_032977.10 43529217
ss2070518 OVLP-000925-109314 A/G 4 rs325155 0 1 44298875 NT_032977.10 43712887
ss2070510 OVLP-000925-64377 G/T 4 rs1316130 0 14 67472376 NT_026437.13 49248853
ss2070516 OVLP-000925-96241 C/T 4 rs168966 0 14 68725369 NT_026437.13 50501846
ss2070497 OVLP-000925-21443 A/C 4 rs183437 0 15 25557989 NT_010194.18 2281115
ss2070498 OVLP-000925-21444 A/G 4 rs183438 0 15 25558156 NT_010194.18 2281282
ss2070495 OVLP-000925-5471 A/G 4 rs183422 0 16 57351801 NT_010498.16 10971119
ss2070502 OVLP-000925-29681 G/T 4 rs181743 0 19 50019139 NT_011109.17 22778265
ss2070520 OVLP-000925-113323 C/T 4 rs550534 0 20 36604912 NT_011362.11 5553404
ss2070519 OVLP-000925-111595 C/G 4 rs183399 0 20 36644968 NT_011362.11 5593460
ss2070508 OVLP-000925-37919 C/T 4 rs183518 0 21 44778026 NT_011512.12 31812218
ss2070505 OVLP-000925-37829 A/G 4 rs183516 0 21 44859008 NT_011512.12 31893200
ss2070509 OVLP-000925-37945 C/G 4 rs183519 0 21 44867110 NT_011512.12 31901302
ss2070506 OVLP-000925-37854 C/G 4 rs183515 0 21 44875302 NT_011512.12 31909494
ss2070507 OVLP-000925-37903 C/T 4 rs183517 0 21 44892765 NT_011512.12 31926957
ss2070496 OVLP-000925-19657 A/G 4 rs1298257 0 3 169918053 NT_005612.17 76212479
ss2070521 OVLP-000925-114449 A/G 4 rs179839 0 5 55238076 NT_034772.7 5128269
ss2070522 OVLP-000925-122324 C/T 4 rs232314 0 5 55245917 NT_034772.7 5136110
ss2070523 OVLP-000925-122325 C/T 4 rs232315 0 5 55248002 NT_034772.7 5138195
ss2070499 OVLP-000925-22074 C/T 4 rs174015 0 5 102796263 NT_034772.7 52686456
ss2070504 OVLP-000925-35687 C/T 4 rs1298260 0 9 38993493 NT_008413.19 38983493
ss2070524 OVLP-000925-124981 A/C 4 rs183433 0 X 29086779 NT_167197.2 26953785
ss2070501 OVLP-000925-27104 A/T 4 N.D. N.D.
30 of 211 subsnp's starting at ss2070503. ss# starting at ss

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