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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-3-12
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:945
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss2072508 OVLP-000925-30398 A/G 4 rs813069 0 1 41105916 NT_032977.10 40519928
ss2072507 OVLP-000925-30369 C/T 4 rs213767 0 1 41115640 NT_032977.10 40529652
ss2072498 OVLP-000925-16165 C/G 4 rs298132 0 1 60309491 NT_032977.10 59723503
ss2072495 OVLP-000925-13861 C/G 4 rs865443 0 1 117622955 NT_032977.10 117036967
ss2072499 OVLP-000925-18800 C/G 4 rs188758 0 10 4604633 NT_008705.17 4594633
ss2072501 OVLP-000925-18898 A/C 4 rs188757 0 10 4648497 NT_008705.17 4638497
ss2072496 OVLP-000925-14178 A/C 4 rs188756 0 10 4693242 NT_008705.17 4683242
ss2072500 OVLP-000925-18804 A/C 4 rs188756 0 10 4693242 NT_008705.17 4683242
ss2072509 OVLP-000925-30637 C/T 4 rs188591 0 10 89378573 NT_030059.14 47685052
ss2072514 OVLP-000925-34711 C/T 4 rs188591 0 10 89378573 NT_030059.14 47685052
ss2072516 OVLP-000925-34818 A/T 4 rs188589 0 10 89425835 NT_030059.14 47732314
ss2072515 OVLP-000925-34798 A/G 4 rs188570 0 10 89503830 NT_030059.14 47810309
ss2072512 OVLP-000925-32503 A/T 4 rs813359 0 14 66289909 NT_026437.13 48066386
ss2072494 OVLP-000925-10789 C/T 4 rs1299104 0 19 15632968 NT_011295.12 15572968
ss2072497 OVLP-000925-15078 G/T 4 rs188505 0 2 17801833 NT_022184.16 1655714
ss2072505 OVLP-000925-26136 C/G 4 rs189288 0 21 44724074 NT_011512.12 31758266
ss2072506 OVLP-000925-28186 A/G 4 rs1299106 0 3 169378464 NT_005612.17 75672890
ss2072489 OVLP-000925-3435 A/C 4 rs1299101 0 3 170267673 NT_005612.17 76562099
ss2072493 OVLP-000925-9636 G/T 4 rs188468 0 4 138340349 NT_016354.20 79418968
ss2072491 OVLP-000925-6777 A/C 4 rs188484 0 4 138532169 NT_016354.20 79610788
ss2072503 OVLP-000925-21453 G/T 4 rs1299105 0 5 84420244 NT_034772.7 34310437
ss2072504 OVLP-000925-22135 A/G 4 rs187717 0 5 102764821 NT_034772.7 52655014
ss2072511 OVLP-000925-31795 C/T 4 rs187717 1 5 102764821 NT_034772.7 52655014
ss2072490 OVLP-000925-6529 A/G 4 rs187398 0 5 109364029 NT_034772.7 59254222
ss2072492 OVLP-000925-8695 G/T 4 rs865403 0 5 167931783 NT_023133.14 12170459
ss2072510 OVLP-000925-31322 G/T 4 rs865410 0 5 168478106 NT_023133.14 12716782
ss2072488 OVLP-000925-3104 G/T 4 rs189297 0 5 179314775 NT_023133.14 23553451
ss2072487 OVLP-000925-3097 C/G 4 rs189298 0 5 179317640 NT_023133.14 23556316
ss2072513 OVLP-000925-34229 G/T 4 rs1299107 0 9 13865991 NT_008413.19 13855991
ss2072502 OVLP-000925-20853 C/T 4 rs105782 0 Y 23100193 NT_011903.12 1294912
30 of 945 subsnp's starting at ss2072508. ss# starting at ss

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