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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-3-17
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:191
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss2074403 OVLP-000925-33068 A/G 4 rs191942 0 1 19365260 NT_032977.10 18779272
ss2074414 OVLP-000925-96997 C/G 4 rs191955 0 1 37132206 NT_032977.10 36546218
ss2074412 OVLP-000925-91966 C/T 4 rs191030 1 1 37163560 NT_032977.10 36577572
ss2074410 OVLP-000925-84337 C/T 4 rs191016 0 1 43739435 NT_032977.10 43153447
ss2074429 OVLP-000925-236235 G/T 4 rs191970 0 1 63594743 NT_032977.10 63008755
ss2074428 OVLP-000925-236234 G/T 4 rs191969 0 1 63594758 NT_032977.10 63008770
ss2074425 OVLP-000925-213842 C/T 4 rs645419 1 11 102845590 NT_033899.9 14842694
ss2074409 OVLP-000925-66649 C/T 4 rs1299865 0 12 94571934 NT_029419.13 57336682
ss2074407 OVLP-000925-63074 C/T 4 rs1299864 0 13 52769116 NT_024524.15 34361010
ss2074408 OVLP-000925-64376 C/T 4 rs1316226 0 14 67475803 NT_026437.13 49252280
ss2074420 OVLP-000925-188682 A/G 4 rs1299868 0 15 50650176 NT_010194.18 27373302
ss2074405 OVLP-000925-46119 A/T 4 rs499485 0 18 350723 NT_010859.15 340723
ss2074413 OVLP-000925-95842 C/T 4 rs190552 0 19 50834937 NT_011109.17 23594063
ss2074418 OVLP-000925-117767 C/T 4 rs191983 0 20 36559767 NT_011362.11 5508259
ss2074415 OVLP-000925-111596 A/C 4 rs191989 0 20 36644924 NT_011362.11 5593416
ss2074416 OVLP-000925-112074 A/G 4 rs414897 0 20 63597984 NT_011362.11 32546476
ss2074402 OVLP-000925-26125 A/G 4 rs192090 0 21 44729895 NT_011512.12 31764087
ss2074404 OVLP-000925-37964 A/G 4 rs192090 0 21 44729895 NT_011512.12 31764087
ss2074426 OVLP-000925-220780 A/G 4 rs813975 0 3 33380472 NT_022517.19 33370472
ss2074401 OVLP-000925-19656 A/G 4 rs1299861 0 3 169918062 NT_005612.17 76212488
ss2074406 OVLP-000925-60450 C/T 4 rs1299863 0 4 82119644 NT_016354.20 23198263
ss2074427 OVLP-000925-228438 G/T 4 rs866413 1 5 13136978 NT_006576.17 13126978
ss2074421 OVLP-000925-200615 C/G 4 rs190428 0 5 53226689 NT_034772.7 3116882
ss2074424 OVLP-000925-207847 A/T 4 rs190393 0 5 53325331 NT_034772.7 3215524
ss2074417 OVLP-000925-114439 C/T 4 rs191387 0 5 55265225 NT_034772.7 5155418
ss2074411 OVLP-000925-87325 A/G 4 rs191781 1 5 67437410 NT_034772.7 17327603
ss2074423 OVLP-000925-202135 C/G 4 rs192429 0 5 132342751 NT_034772.7 82232944
ss2074422 OVLP-000925-202132 C/T 4 rs190636 0 5 132342887 NT_034772.7 82233080
ss2074419 OVLP-000925-157205 A/G 4 rs191802 0 6 82225261 NT_025741.16 21995327
ss2074400 OVLP-000925-6538 A/T 4 N.D. N.D.
30 of 191 subsnp's starting at ss2074403. ss# starting at ss

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