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View SNP Submission Batch
Submitter Handle:PERLEGEN
Submitter Batch ID:09-01
Submitter Method ID:WAFER_HYB
Citation:Blocks of Limited Haplotype Diversity Revealed by High-Resolution Scanning of Human Chromosome 21
Population:NCBI|NIHPDR
Comment:For this submission, we required that the minor allele be detected at least twice, i.e., a minimum allele frequency of 10% in our sample of 20 chromosomes. We also excluded sites where three or more alleles were detected. For validation, 220 out of 227 randomly selected SNP's were confirmed by dideoxy sequencing.
Batch Total SubSNP(ss) Count:25326


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss3995624 P00199472 G/T 10 rs2821567 0 21 13005683 NT_011512.12 39875
ss3995625 P00199473 A/T 9 rs2821568 0 21 13008762 NT_011512.12 42954
ss3995626 P00199474 A/G 14 rs2821569 0 21 13009374 NT_011512.12 43566
ss3995627 P00199475 A/G 17 rs2821570 0 21 13012279 NT_011512.12 46471
ss3995628 P00199476 C/T 11 rs2821571 0 21 13012468 NT_011512.12 46660
ss3995629 P00199477 C/T 12 rs2821572 0 21 13012593 NT_011512.12 46785
ss3995630 P00199479 A/G 14 rs2821573 0 21 13013687 NT_011512.12 47879
ss3995631 P00199480 A/T 16 rs2821574 0 21 13015459 NT_011512.12 49651
ss3995632 P00199481 A/G 14 rs513946 0 21 13016422 NT_011512.12 50614
ss3995633 P00199483 A/G 6 rs2821575 0 21 13017879 NT_011512.12 52071
ss3995634 P00199484 A/T 16 rs8175164 0 21 13021007 NT_011512.12 55199
ss3995635 P00199485 C/G 15 rs2821577 0 21 13021266 NT_011512.12 55458
ss3995636 P00199486 A/C 14 rs461410 0 21 13021806 NT_011512.12 55998
ss3995637 P00199487 A/T 13 rs522433 0 21 13022220 NT_011512.12 56412
ss3995638 P00199488 C/T 14 rs2821580 0 21 13022697 NT_011512.12 56889
ss3995639 P00199489 A/G 12 rs458354 0 21 13022897 NT_011512.12 57089
ss3995640 P00199490 C/T 11 rs2821581 0 21 13024992 NT_011512.12 59184
ss3995641 P00199491 A/G 17 rs2821582 0 21 13025315 NT_011512.12 59507
ss3995642 P00199492 A/G 17 rs2821583 0 21 13025844 NT_011512.12 60036
ss3995643 P00199495 G/T 12 rs2821584 0 21 13028651 NT_011512.12 62843
ss3995644 P00199496 A/G 16 rs2821585 0 21 13028755 NT_011512.12 62947
ss3995645 P00199497 C/T 17 rs2821586 0 21 13029125 NT_011512.12 63317
ss3995646 P00199498 A/G 13 rs2821587 0 21 13029172 NT_011512.12 63364
ss3995647 P00199499 C/T 16 rs2821588 0 21 13029214 NT_011512.12 63406
ss3995648 P00199500 A/G 10 rs2821589 0 21 13029354 NT_011512.12 63546
ss3995649 P00199501 G/T 14 rs2821590 0 21 13029409 NT_011512.12 63601
ss3995650 P00199502 C/G 13 rs2821591 0 21 13029436 NT_011512.12 63628
ss3995651 P00199503 G/T 13 rs2821592 0 21 13029658 NT_011512.12 63850
ss3995652 P00199504 C/T 14 rs461080 0 21 13029724 NT_011512.12 63916
ss3995623 P00199471 G/T 11 N.D. N.D.
30 of 25326 subsnp's starting at ss3995624. ss# starting at ss