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View SNP Submission Batch
Submitter Handle:SC_JCM
Submitter Batch ID:02-JAN-2003
Submitter Method ID:SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Citation:SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:not supplied
Batch Total SubSNP(ss) Count:700465


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss5609958 NT_004350.12_253015 A/T 4 rs879965699 0 1 51403 NT_077402.3 41403
ss5609959 NT_004350.12_271858 A/G 5 rs2854681 1 1 70246 NT_077402.3 60246
ss5609955 NT_004350.12_289828 A/G 4 rs2103136 0 1 88216 NT_077402.3 78216
ss5609956 NT_004350.12_388571 A/C 5 rs4072383 1 1 935954 NT_032977.10 349966
ss5609953 NT_004321.12_538474 A/G 2 rs3923081 0 1 3306142 NT_032977.10 2720154
ss5609963 NT_004386.12_833152 C/T 2 rs2119302 0 1 46662668 NT_032977.10 46076680
ss5609962 NT_004386.12_1058421 A/G 2 rs1502920 1 1 46887937 NT_032977.10 46301949
ss5609976 NT_004464.12_331908 A/G 3 rs1926257 0 1 69420946 NT_032977.10 68834958
ss5609979 NT_004464.12_1537150 A/G 4 rs1591384 0 1 70626188 NT_032977.10 70040200
ss5609975 NT_004464.12_2600733 A/G 3 rs492016 1 1 71689776 NT_032977.10 71103788
ss5609977 NT_004464.12_5174946 C/T 6 rs516753 0 1 74266052 NT_032977.10 73680064
ss5609980 NT_004464.12_5460327 A/G 2 rs3845350 0 1 74551486 NT_032977.10 73965498
ss5609978 NT_004464.12_6424851 C/T 2 rs1475679 1 1 75517824 NT_032977.10 74931836
ss5609982 NT_004483.12_331762 C/T 2 rs1543675 0 1 78481194 NT_032977.10 77895206
ss5609981 NT_004483.12_1730160 A/G 3 rs1837183 1 1 79879600 NT_032977.10 79293612
ss5609971 NT_004434.12_501380 A/G 2 rs2794006 1 1 146304261 NT_004487.20 3119674
ss5609970 NT_004434.12_337125 A/T 2 rs3916177 1 1 148919412 NT_004487.20 5734825
ss5609968 NT_004434.12_206339 C/G 3 rs3867817 1 1 149050148 NT_004487.20 5865561
ss5609972 NT_004441.12_194022 C/T 2 rs1015996 1 1 153003632 NT_004487.20 9819045
ss5609973 NT_004441.12_387436 A/G 10 rs1831238 0 1 153197046 NT_004487.20 10012459
ss5609974 NT_004441.12_682903 A/C 6 rs719081 1 1 153492513 NT_004487.20 10307926
ss5609967 NT_004433.12_261778 A/T 5 rs4233064 0 1 232487577 NT_167186.2 8878642
ss5609965 NT_004433.12_1164390 C/T 2 rs1294197 1 1 233389658 NT_167186.2 9780723
ss5609954 NT_004350.12_16046 A/G 2 N.D. N.D.
ss5609957 NT_004350.12_415343 A/C 4 N.D. N.D.
ss5609960 NT_004350.12_303121 C/T 4 N.D. N.D.
ss5609961 NT_004350.12_303162 C/T 4 N.D. N.D.
ss5609964 NT_004424.12_1901959 A/G 5 N.D. N.D.
ss5609966 NT_004433.12_1461036 C/T 2 N.D. N.D.
ss5609969 NT_004434.12_674390 G/T 2 N.D. N.D.
30 of 700465 subsnp's starting at ss5609958. ss# starting at ss