NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:PERLEGEN
Submitter Batch ID:08-03
Submitter Method ID:WAFER_HYB
Citation:Matching Strategies for Genetic Assocation Studies in Structured Populations
Population:NCBI|NIHPDR
Comment:For this submission, we required that each allele be detected at least eight times, i.e., a minimum allele frequency of 40% in a sample of at least 20 chromosomes used for SNP discovery.
Batch Total SubSNP(ss) Count:261


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss12673809 PS00154155 A/G 28 rs2295706 0 14 23476157 NT_026437.13 5252634
ss12673810 PS00163630 C/T 32 rs9332386 0 14 32168596 NT_026437.13 13945073
ss12673811 PS00173219 A/T 32 rs9332387 0 14 39444622 NT_026437.13 21221099
ss12673817 PS00251822 A/C 32 rs8008169 0 14 49140552 NT_026437.13 30917029
ss12673812 PS00184132 A/G 31 rs9323327 0 14 58080057 NT_026437.13 39856534
ss12673813 PS00191550 C/T 31 rs9332388 0 14 66413944 NT_026437.13 48190421
ss12673814 PS00203663 C/T 31 rs2287403 0 14 74792437 NT_026437.13 56568914
ss12673816 PS00248306 C/T 33 rs8013489 0 14 83065771 NT_026437.13 64842248
ss12673815 PS00236553 A/G 28 rs9324014 0 14 99746972 NT_026437.13 81523449
ss12673829 PS00435768 A/C 21 rs2423422 0 20 9691426 NT_011387.9 9631426
ss12673827 PS00409392 A/G 24 rs6136556 0 20 18889416 NT_011387.9 18829416
ss12673828 PS00423147 C/G 24 rs4810264 0 20 39391934 NT_011362.11 8340426
ss12673826 PS00389139 A/G 25 rs6018600 0 20 47629833 NT_011362.11 16578325
ss12673804 PS00025079 A/G 20 rs2826689 0 21 21138436 NT_011512.12 8172628
ss12673805 PS00103632 G/T 31 rs5748736 0 22 16912130 NT_187355.1 1757812
ss12673806 PS00115603 A/G 31 rs3752523 0 22 26536184 NT_011520.13 7826620
ss12673807 PS00127443 A/G 25 rs5754891 0 22 34206199 NT_011520.13 15496635
ss12673808 PS00138018 C/T 24 rs9306469 0 22 43684766 NT_011520.13 24975202
ss12673803 PS00841800 C/T 23 rs6449586 0 5 51339044 NT_034772.7 1229237
ss12673823 PS00310440 A/T 20 rs850157 0 6 8582699 NT_007592.16 8522699
ss12673819 PS00266143 A/C 27 rs387816 1 6 15803001 NT_007592.16 15743001
ss12673820 PS00272397 A/G 27 rs208507 1 6 66230370 NT_025741.16 6000436
ss12673818 PS00256234 G/T 26 rs1268169 1 6 108686774 NT_025741.16 48456840
ss12673825 PS00358701 C/T 25 rs590991 1 6 116761419 NT_025741.16 56531485
ss12673822 PS00304404 C/G 21 rs212772 1 6 133481873 NT_025741.16 73251939
ss12673824 PS00337282 A/G 23 rs9322330 0 6 151752183 NT_025741.16 91522249
ss12673821 PS00286389 C/T 19 rs9294997 0 6 169380518 NT_025741.16 109150584
ss12673833 PS00475334 A/G 24 rs4720913 0 7 10836267 NT_007819.18 10826267
ss12673831 PS00470571 C/T 26 rs9332389 0 7 81802463 NT_007933.16 19295684
ss12673832 PS00472847 A/G 25 rs9332390 0 7 114531090 NT_007933.16 52024311
30 of 261 subsnp's starting at ss12673809. ss# starting at ss