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View SNP Submission Batch
Submitter Handle:SC_SNP
Submitter Batch ID:CHR1_Overlap_SNPs
Submitter Method ID:CHR1_OVERLAP_SNPS
Citation:Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:not supplied
Batch Total SubSNP(ss) Count:59144


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss12992588 NT_004321.15_112882 G/T 7 rs3100865 0 1 2889542 NT_032977.10 2303554
ss12992590 NT_004321.15_124196 C/T 5 rs2842910 0 1 2900856 NT_032977.10 2314868
ss12992591 NT_004321.15_129187 C/T 8 rs2842916 0 1 2905847 NT_032977.10 2319859
ss12992560 NT_004321.15_1000684 C/T 5 rs1175546 1 1 3777345 NT_032977.10 3191357
ss12992562 NT_004321.15_1011795 C/T 13 rs9424282 0 1 3788457 NT_032977.10 3202469
ss12992563 NT_004321.15_1012000 C/G 12 rs9424283 0 1 3788662 NT_032977.10 3202674
ss12992564 NT_004321.15_1013312 C/T 6 rs9424284 0 1 3789974 NT_032977.10 3203986
ss12992565 NT_004321.15_1016953 A/G 12 rs9424285 0 1 3793615 NT_032977.10 3207627
ss12992566 NT_004321.15_1022705 G/T 16 rs9424286 0 1 3799367 NT_032977.10 3213379
ss12992567 NT_004321.15_1029516 C/T 14 rs7416185 0 1 3806178 NT_032977.10 3220190
ss12992568 NT_004321.15_1031362 A/C 12 rs7527199 0 1 3808024 NT_032977.10 3222036
ss12992569 NT_004321.15_1032216 A/T 10 rs7530315 0 1 3808878 NT_032977.10 3222890
ss12992570 NT_004321.15_1039226 C/G 9 rs4648410 0 1 3815888 NT_032977.10 3229900
ss12992571 NT_004321.15_1039413 A/T 10 rs6702916 0 1 3816075 NT_032977.10 3230087
ss12992572 NT_004321.15_1039481 C/T 12 rs6702935 0 1 3816143 NT_032977.10 3230155
ss12992573 NT_004321.15_1039556 C/T 12 rs6703035 0 1 3816218 NT_032977.10 3230230
ss12992574 NT_004321.15_1040240 C/T 12 rs9286791 0 1 3816902 NT_032977.10 3230914
ss12992575 NT_004321.15_1041145 C/G 11 rs1104855 1 1 3817807 NT_032977.10 3231819
ss12992576 NT_004321.15_1041221 A/G 14 rs1104856 1 1 3817883 NT_032977.10 3231895
ss12992577 NT_004321.15_1043810 A/G 13 rs9286792 0 1 3820472 NT_032977.10 3234484
ss12992578 NT_004321.15_1043867 C/T 8 rs9424287 0 1 3820529 NT_032977.10 3234541
ss12992579 NT_004321.15_1044513 A/C 12 rs9424288 0 1 3821175 NT_032977.10 3235187
ss12992580 NT_004321.15_1045357 C/T 18 rs9424289 0 1 3822019 NT_032977.10 3236031
ss12992581 NT_004321.15_1045414 A/C 14 rs1936378 1 1 3822076 NT_032977.10 3236088
ss12992582 NT_004321.15_1046286 A/G 14 rs2027548 0 1 3822948 NT_032977.10 3236960
ss12992583 NT_004321.15_1048783 C/T 14 rs9424290 0 1 3825445 NT_032977.10 3239457
ss12992584 NT_004321.15_1052890 A/G 8 rs1836 0 1 3829552 NT_032977.10 3243564
ss12992585 NT_004321.15_1053357 G/T 8 rs2275828 1 1 3830019 NT_032977.10 3244031
ss12992586 NT_004321.15_1053363 C/G 6 rs2275826 1 1 3830025 NT_032977.10 3244037
ss12992587 NT_004321.15_1054093 C/T 6 rs4648417 0 1 3830755 NT_032977.10 3244767
30 of 59144 subsnp's starting at ss12992588. ss# starting at ss