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View SNP Submission Batch
Submitter Handle:
SC_SNP
Submitter Batch ID:
CHR1_Overlap_SNPs
Submitter Method ID:
CHR1_OVERLAP_SNPS
Citation:
Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:
not supplied
Batch Total SubSNP(ss) Count:
59144
SubSNP(ss)
Submitter
SNP_ID
SNP
Allele
Samplesize
RefSNP(rs)
ss2rs
Orien
Chr
ChrPos
Contig
Accession
Contig
Pos
ss12992588
NT_004321.15_112882
G/T
7
rs3100865
0
1
2889542
NT_032977.10
2303554
ss12992590
NT_004321.15_124196
C/T
5
rs2842910
0
1
2900856
NT_032977.10
2314868
ss12992591
NT_004321.15_129187
C/T
8
rs2842916
0
1
2905847
NT_032977.10
2319859
ss12992560
NT_004321.15_1000684
C/T
5
rs1175546
1
1
3777345
NT_032977.10
3191357
ss12992562
NT_004321.15_1011795
C/T
13
rs9424282
0
1
3788457
NT_032977.10
3202469
ss12992563
NT_004321.15_1012000
C/G
12
rs9424283
0
1
3788662
NT_032977.10
3202674
ss12992564
NT_004321.15_1013312
C/T
6
rs9424284
0
1
3789974
NT_032977.10
3203986
ss12992565
NT_004321.15_1016953
A/G
12
rs9424285
0
1
3793615
NT_032977.10
3207627
ss12992566
NT_004321.15_1022705
G/T
16
rs9424286
0
1
3799367
NT_032977.10
3213379
ss12992567
NT_004321.15_1029516
C/T
14
rs7416185
0
1
3806178
NT_032977.10
3220190
ss12992568
NT_004321.15_1031362
A/C
12
rs7527199
0
1
3808024
NT_032977.10
3222036
ss12992569
NT_004321.15_1032216
A/T
10
rs7530315
0
1
3808878
NT_032977.10
3222890
ss12992570
NT_004321.15_1039226
C/G
9
rs4648410
0
1
3815888
NT_032977.10
3229900
ss12992571
NT_004321.15_1039413
A/T
10
rs6702916
0
1
3816075
NT_032977.10
3230087
ss12992572
NT_004321.15_1039481
C/T
12
rs6702935
0
1
3816143
NT_032977.10
3230155
ss12992573
NT_004321.15_1039556
C/T
12
rs6703035
0
1
3816218
NT_032977.10
3230230
ss12992574
NT_004321.15_1040240
C/T
12
rs9286791
0
1
3816902
NT_032977.10
3230914
ss12992575
NT_004321.15_1041145
C/G
11
rs1104855
1
1
3817807
NT_032977.10
3231819
ss12992576
NT_004321.15_1041221
A/G
14
rs1104856
1
1
3817883
NT_032977.10
3231895
ss12992577
NT_004321.15_1043810
A/G
13
rs9286792
0
1
3820472
NT_032977.10
3234484
ss12992578
NT_004321.15_1043867
C/T
8
rs9424287
0
1
3820529
NT_032977.10
3234541
ss12992579
NT_004321.15_1044513
A/C
12
rs9424288
0
1
3821175
NT_032977.10
3235187
ss12992580
NT_004321.15_1045357
C/T
18
rs9424289
0
1
3822019
NT_032977.10
3236031
ss12992581
NT_004321.15_1045414
A/C
14
rs1936378
1
1
3822076
NT_032977.10
3236088
ss12992582
NT_004321.15_1046286
A/G
14
rs2027548
0
1
3822948
NT_032977.10
3236960
ss12992583
NT_004321.15_1048783
C/T
14
rs9424290
0
1
3825445
NT_032977.10
3239457
ss12992584
NT_004321.15_1052890
A/G
8
rs1836
0
1
3829552
NT_032977.10
3243564
ss12992585
NT_004321.15_1053357
G/T
8
rs2275828
1
1
3830019
NT_032977.10
3244031
ss12992586
NT_004321.15_1053363
C/G
6
rs2275826
1
1
3830025
NT_032977.10
3244037
ss12992587
NT_004321.15_1054093
C/T
6
rs4648417
0
1
3830755
NT_032977.10
3244767
30 of 59144 subsnp's starting at ss12992588.
10
30
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100
ss# starting at ss