NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:WI_SSAHASNP
Submitter Batch ID:WIBR_S227_SNPS_200310
Submitter Method ID:WIBR_S227_SNPS_200310
Citation:SNPs detected by comparing chromosome 18 reads to NCBI build 34 Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:not supplied
Batch Total SubSNP(ss) Count:60004


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss11177035 chr12.NT_029419.10_5411823 A/G 2 rs4768457 0 12 42874714 NT_029419.13 5639462
ss11178725 chr12.NT_029419.10_12694464 A/G 2 rs7398567 0 12 50157375 NT_029419.13 12922123
ss11182025 chr14.NT_026437.10_84826465 C/G 2 rs4284570 0 14 104440087 NT_026437.13 86216564
ss11185912 chr15.NT_010274.15_7748739 A/C 2 rs4777798 0 15 92239982 NT_010194.18 68963108
ss11190830 chr18.NT_010966.13_2358134 A/G 2 rs4375768 0 18 23289068 NT_010966.15 2377862
ss11190850 chr18.NT_010966.13_7295165 G/T 2 rs7407068 0 18 28226099 NT_010966.15 7314893
ss11190843 chr18.NT_010966.13_17934199 C/T 2 rs4800053 0 18 38865133 NT_010966.15 17953927
ss11190825 chr18.NT_010966.13_22593934 C/T 3 rs7407052 0 18 43524867 NT_010966.15 22613661
ss11190833 chr18.NT_010966.13_25998082 C/T 2 rs4890704 0 18 46929017 NT_010966.15 26017811
ss11190799 chr18.NT_010966.13_29432875 A/G 2 rs4939980 0 18 50417403 NT_010966.15 29506197
ss11190845 chr18.NT_010966.13_29964306 A/G 2 rs664298 1 18 50948834 NT_010966.15 30037628
ss11190821 chr18.NT_010966.13_31187009 C/T 2 rs7407048 0 18 52171537 NT_010966.15 31260331
ss11190812 chr18.NT_025028.13_2135325 C/G 2 rs572722 0 18 56677230 NT_010966.15 35766024
ss11190800 chr18.NT_025028.13_2867629 A/G 2 rs1217575 0 18 57409533 NT_010966.15 36498327
ss11190854 chr18.NT_025028.13_6170082 A/G 3 rs4940496 0 18 60712003 NT_010966.15 39800797
ss11190811 chr18.NT_025028.13_13306986 G/T 3 rs560991 1 18 67848903 NT_010966.15 46937697
ss11190846 chr18.NT_025004.13_715107 G/T 3 rs6566081 0 18 75336497 NT_010966.15 54425291
ss11190836 chr18.NT_025004.13_2521553 A/G 4 rs2597298 0 18 77142942 NT_010966.15 56231736
ss11146903 chr4.NT_037622.3_27985 G/T 2 rs4413906 1 4 37984 NT_006051.19 27984
ss11147894 chr4.NT_037622.3_28183 C/G 2 rs4690247 0 4 38182 NT_006051.19 28182
ss11147911 chr4.NT_037622.3_28201 C/T 2 rs4585246 0 4 38200 NT_006051.19 28200
ss11148933 chr4.NT_006316.15_1800205 C/G 2 rs4697850 0 4 11123223 NT_006316.17 2306746
ss11151876 chr5.NT_023089.13_16280786 C/T 2 rs2582674 0 5 16297939 NT_006576.17 16287939
ss11155841 chr6.NT_007592.13_24694240 C/T 2 rs2477237 0 6 33929336 NT_007592.16 33869336
ss11154749 chr6.NT_007592.13_29075887 C/T 3 rs4711533 0 6 38310984 NT_007592.16 38250984
ss11154941 chr6.NT_033172.4_638997 G/T 2 rs4323339 0 6 58450378 NT_007592.16 58390378
ss11131147 chr1.NT_077387.2_12180 A/T 2 rs2500989 1 N.D. N.D.
ss11135411 chr1.NT_077387.2_12148 C/T 2 rs2500990 1 N.D. N.D.
ss11135402 chr1.NT_077387.2_12034 A/C 2 rs2500991 1 N.D. N.D.
ss11135841 chr1.NT_077930.1_39637 G/T 2 rs2951569 0 N.D. N.D.
30 of 60004 subsnp's starting at ss11177035. ss# starting at ss

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement