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View SNP Submission Batch
Submitter Handle:SC_SNP
Submitter Batch ID:SC-CHRX_NA10470-200402
Submitter Method ID:CHRX_NA10470
Citation:SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:not supplied
Batch Total SubSNP(ss) Count:2451


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss18052650 SC-CHRX_NA10470-200402.chr1.NT_004873.15_2756581 A/C 2 rs12015135 0 1 16052921 NT_032977.10 15466933
ss18052648 SC-CHRX_NA10470-200402.chr1.NT_028050.13_9030663 G/T 2 rs12015133 0 1 100376163 NT_032977.10 99790175
ss18052649 SC-CHRX_NA10470-200402.chr1.NT_028050.13_9030767 A/G 2 rs12015134 0 1 100376267 NT_032977.10 99790279
ss18052655 SC-CHRX_NA10470-200402.chr11.NT_009237.16_3897555 A/G 2 rs6650172 0 11 5112385 NT_009237.19 5052385
ss18052658 SC-CHRX_NA10470-200402.chr11.NT_009237.16_39810652 C/T 2 rs6650166 0 11 41025162 NT_009237.19 40965162
ss18052656 SC-CHRX_NA10470-200402.chr11.NT_009237.16_46857331 G/T 2 rs12015137 0 11 48071839 NT_009237.19 48011839
ss18052651 SC-CHRX_NA10470-200402.chr11.NT_033903.6_5269112 C/T 2 rs6650185 0 11 60328597 NT_167190.2 5803523
ss18052659 SC-CHRX_NA10470-200402.chr11.NT_033903.6_8030128 C/T 2 rs6650188 0 11 63089614 NT_167190.2 8564540
ss18052657 SC-CHRX_NA10470-200402.chr11.NT_008984.16_5420869 C/T 2 rs9667551 0 11 93426081 NT_033899.9 5423185
ss18052652 SC-CHRX_NA10470-200402.chr11.NT_008984.16_5421159 C/T 2 rs9734603 0 11 93426371 NT_033899.9 5423475
ss18052666 SC-CHRX_NA10470-200402.chr12.NT_009714.16_13085542 G/T 2 rs6650198 0 12 20173634 NT_009714.18 13088984
ss18052670 SC-CHRX_NA10470-200402.chr12.NT_009714.16_13085707 C/T 2 rs6650194 0 12 20173799 NT_009714.18 13089149
ss18052660 SC-CHRX_NA10470-200402.chr12.NT_029419.10_4601170 C/T 2 rs1095048 0 12 42064062 NT_029419.13 4828810
ss18052668 SC-CHRX_NA10470-200402.chr12.NT_029419.10_4601494 C/T 2 rs1095049 0 12 42064386 NT_029419.13 4829134
ss18052669 SC-CHRX_NA10470-200402.chr12.NT_029419.10_4601508 C/T 2 rs1226307 0 12 42064400 NT_029419.13 4829148
ss18052662 SC-CHRX_NA10470-200402.chr12.NT_029419.10_9655861 G/T 2 rs6650222 0 12 47118772 NT_029419.13 9883520
ss18052663 SC-CHRX_NA10470-200402.chr12.NT_029419.10_15578629 C/T 2 rs12015142 0 12 53041539 NT_029419.13 15806287
ss18052661 SC-CHRX_NA10470-200402.chr12.NT_029419.10_15578728 A/G 2 rs12015140 0 12 53041638 NT_029419.13 15806386
ss18052664 SC-CHRX_NA10470-200402.chr12.NT_029419.10_15578778 C/T 2 rs12015143 0 12 53041688 NT_029419.13 15806436
ss18052665 SC-CHRX_NA10470-200402.chr12.NT_029419.10_15578804 C/T 2 rs12015144 0 12 53041714 NT_029419.13 15806462
ss18052667 SC-CHRX_NA10470-200402.chr12.NT_019546.15_23336974 C/T 2 rs6650214 0 12 99461005 NT_029419.13 62225753
ss18052646 SC-CHRX_NA10470-200402.chr1.NT_028050.13_9332737 A/G 2 rs12015132 0 12 129347410 NT_029419.13 92112158
ss18052671 SC-CHRX_NA10470-200402.chr13.NT_009952.14_4081925 C/T 2 rs6650279 0 13 90339995 NT_009952.15 4087016
ss18052672 SC-CHRX_NA10470-200402.chr13.NT_009952.14_6917646 C/G 2 rs6650318 0 13 93175717 NT_009952.15 6922738
ss18052645 SC-CHRX_NA10470-200402.chr1.NT_028050.13_9333297 A/T 2 rs12015131 0 2 116362149 NT_005403.18 21866134
ss18052647 SC-CHRX_NA10470-200402.chr1.NT_077988.2_37395 C/G 2 rs9701165 0 22 12177055 NT_187337.1 149500
ss18052674 SC-CHRX_NA10470-200402.chr13.NT_024524.13_29285136 C/T 2 rs12015147 0 4 163056230 NT_016354.20 104134849
ss18052654 SC-CHRX_NA10470-200402.chr11.NT_008984.16_5421298 C/G 2 rs9666499 0 7 57962795 NT_007819.18 57952795
ss18052653 SC-CHRX_NA10470-200402.chr11.NT_008984.16_5420719 A/G 2 N.D. N.D.
ss18052673 SC-CHRX_NA10470-200402.chr13.NT_024524.13_48294120 A/G 2 N.D. N.D.
30 of 2451 subsnp's starting at ss18052650. ss# starting at ss