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View SNP Submission Batch
Submitter Handle:SC_SNP
Submitter Batch ID:SC-CHR1_NA17109-200402
Submitter Method ID:CHR1_NA17109
Citation:SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:not supplied
Batch Total SubSNP(ss) Count:107228


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss18135792 SC-CHR1_NA17109-200402.chr1.NT_004321.15_225950 A/G 2 rs10909860 0 1 3002611 NT_032977.10 2416623
ss18135775 SC-CHR1_NA17109-200402.chr1.NT_004547.16_344624 C/G 2 rs12057139 0 1 4280931 NT_032977.10 3694943
ss18135779 SC-CHR1_NA17109-200402.chr1.NT_004547.16_344646 C/G 2 rs12057140 0 1 4280953 NT_032977.10 3694965
ss18135795 SC-CHR1_NA17109-200402.chr1.NT_021937.16_3136003 A/T 3 rs10864372 0 1 8948885 NT_032977.10 8362897
ss18135777 SC-CHR1_NA17109-200402.chr1.NT_037485.3_357812 C/T 3 rs11247827 0 1 25920112 NT_032977.10 25334124
ss18135788 SC-CHR1_NA17109-200402.chr1.NT_032977.6_7357736 C/T 2 rs12057143 0 1 45285617 NT_032977.10 44699629
ss18135796 SC-CHR1_NA17109-200402.chr1.NT_032977.6_12171046 A/G 2 rs12057147 0 1 50142304 NT_032977.10 49556316
ss18135791 SC-CHR1_NA17109-200402.chr1.NT_032977.6_13227269 A/G 3 rs12057144 0 1 51198526 NT_032977.10 50612538
ss18135773 SC-CHR1_NA17109-200402.chr1.NT_032977.6_20625906 C/T 3 rs12057137 0 1 58597164 NT_032977.10 58011176
ss18135778 SC-CHR1_NA17109-200402.chr1.NT_032977.6_22764198 G/T 2 rs11207661 0 1 60735456 NT_032977.10 60149468
ss18135790 SC-CHR1_NA17109-200402.chr1.NT_032977.6_31333873 A/C 2 rs10889805 0 1 69305121 NT_032977.10 68719133
ss18135785 SC-CHR1_NA17109-200402.chr1.NT_026943.13_3849008 C/T 3 rs11162510 0 1 78563149 NT_032977.10 77977161
ss18135798 SC-CHR1_NA17109-200402.chr1.NT_004686.16_3203866 C/T 3 rs12057148 0 1 90863792 NT_032977.10 90277804
ss18135789 SC-CHR1_NA17109-200402.chr1.NT_028050.13_8564819 A/C 4 rs11166373 0 1 99910319 NT_032977.10 99324331
ss18135793 SC-CHR1_NA17109-200402.chr1.NT_004754.15_467488 C/T 4 rs12057145 0 1 116009282 NT_032977.10 115423294
ss18135782 SC-CHR1_NA17109-200402.chr1.NT_004668.16_7075398 C/T 2 rs10918935 0 1 168600688 NT_004487.20 25416101
ss18135774 SC-CHR1_NA17109-200402.chr1.NT_004487.16_3357100 C/T 2 rs12057138 0 1 174339470 NT_004487.20 31154883
ss18135797 SC-CHR1_NA17109-200402.chr1.NT_004487.16_12076927 A/G 3 rs10797828 0 1 183059295 NT_004487.20 39874708
ss18135771 SC-CHR1_NA17109-200402.chr1.NT_004487.16_13741496 A/T 2 rs12057135 0 1 184723865 NT_004487.20 41539278
ss18135784 SC-CHR1_NA17109-200402.chr1.NT_004671.15_849839 C/T 2 rs12057142 0 1 189525723 NT_004487.20 46341136
ss18135794 SC-CHR1_NA17109-200402.chr1.NT_004671.15_4398005 C/T 2 rs12057146 0 1 193073889 NT_004487.20 49889302
ss18135772 SC-CHR1_NA17109-200402.chr1.NT_034410.5_815677 C/G 2 rs12057136 0 1 204419868 NT_004487.20 61235281
ss18135787 SC-CHR1_NA17109-200402.chr1.NT_021877.16_7659082 A/G 2 rs11120248 0 1 214049833 NT_004487.20 70865246
ss18135783 SC-CHR1_NA17109-200402.chr1.NT_021973.16_1321254 A/G 2 rs11122261 0 1 231254519 NT_167186.2 7645584
ss18135781 SC-CHR1_NA17109-200402.chr1.NT_021973.16_1530719 A/G 2 rs12057141 0 1 231463984 NT_167186.2 7855049
ss18135786 SC-CHR1_NA17109-200402.chr1.NT_021973.16_1983150 C/G 3 rs11122372 0 1 231916415 NT_167186.2 8307480
ss18135800 SC-CHR1_NA17109-200402.chr1.NT_004836.15_1992286 C/T 2 rs12057149 0 1 237071197 NT_167186.2 13462262
ss18135799 SC-CHR1_NA17109-200402.chr1.NT_004836.15_2873423 C/T 2 rs10925545 0 1 237952334 NT_167186.2 14343399
ss18135780 SC-CHR1_NA17109-200402.chr1.NT_077988.2_22684 G/T 2 rs9724650 0 22 12191763 NT_187337.1 164208
ss18135776 SC-CHR1_NA17109-200402.chr1.NT_077988.2_22658 A/G 4 rs9658795 0 22 12191789 NT_187337.1 164234
30 of 107228 subsnp's starting at ss18135792. ss# starting at ss