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View SNP Submission Batch
Submitter Handle:SC_SNP
Submitter Batch ID:SC-CHR6_NA11321-200402
Submitter Method ID:CHR6_NA11321
Citation:SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNPSSAHA: A Fast Search Method for Large DNA Databases
Comment:not supplied
Batch Total SubSNP(ss) Count:8580


SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss18339037 SC-CHR6_NA11321-200402.chr1.NT_004538.15_244058 G/T 2 rs10799120 0 1 28728240 NT_032977.10 28142252
ss18339035 SC-CHR6_NA11321-200402.chr1.NT_032977.6_4686348 A/G 2 rs12172719 0 1 42614230 NT_032977.10 42028242
ss18339038 SC-CHR6_NA11321-200402.chr1.NT_032977.6_4688683 A/G 2 rs10890203 0 1 42616565 NT_032977.10 42030577
ss18339032 SC-CHR6_NA11321-200402.chr1.NT_032977.6_29285636 A/C 2 rs10889676 0 1 67256884 NT_032977.10 66670896
ss18339054 SC-CHR6_NA11321-200402.chr1.NT_029860.11_1187267 A/G 2 rs12172728 0 1 104568555 NT_032977.10 103982567
ss18339055 SC-CHR6_NA11321-200402.chr1.NT_029860.11_1187306 C/G 2 rs12172729 0 1 104568594 NT_032977.10 103982606
ss18339056 SC-CHR6_NA11321-200402.chr1.NT_029860.11_1187625 A/G 2 rs12172730 0 1 104568913 NT_032977.10 103982925
ss18339040 SC-CHR6_NA11321-200402.chr1.NT_029860.11_2568380 A/G 2 rs2999730 1 1 105949647 NT_032977.10 105363659
ss18339034 SC-CHR6_NA11321-200402.chr1.NT_077389.2_384922 G/T 2 rs11249417 0 1 145060516 NT_004487.20 1875929
ss18339045 SC-CHR6_NA11321-200402.chr1.NT_004668.16_1861067 C/T 2 rs10799915 0 1 163385805 NT_004487.20 20201218
ss18339046 SC-CHR6_NA11321-200402.chr1.NT_004668.16_1861233 A/T 2 rs12172725 0 1 163385971 NT_004487.20 20201384
ss18339051 SC-CHR6_NA11321-200402.chr1.NT_004668.16_3243665 G/T 2 rs3738196 1 1 164768956 NT_004487.20 21584369
ss18339052 SC-CHR6_NA11321-200402.chr1.NT_004487.16_4771741 C/T 2 rs10798414 0 1 175754113 NT_004487.20 32569526
ss18339030 SC-CHR6_NA11321-200402.chr1.NT_004671.15_2641148 A/C 3 rs12172717 0 1 191317032 NT_004487.20 48132445
ss18339053 SC-CHR6_NA11321-200402.chr1.NT_004671.15_3254170 C/T 2 rs6663538 0 1 191930054 NT_004487.20 48745467
ss18339031 SC-CHR6_NA11321-200402.chr1.NT_004671.15_8811922 A/G 2 rs10801607 0 1 197487806 NT_004487.20 54303219
ss18339057 SC-CHR6_NA11321-200402.chr1.NT_004836.15_1856764 A/G 2 rs10458435 0 1 236935675 NT_167186.2 13326740
ss18339047 SC-CHR6_NA11321-200402.chr1.NT_004836.15_4224688 A/G 2 rs10733123 0 1 239303599 NT_167186.2 15694664
ss18339048 SC-CHR6_NA11321-200402.chr1.NT_004836.15_4224872 A/G 2 rs10733124 0 1 239303783 NT_167186.2 15694848
ss18339043 SC-CHR6_NA11321-200402.chr1.NT_004836.15_8827081 C/T 2 rs12172723 0 1 244000415 NT_167186.2 20391480
ss18339039 SC-CHR6_NA11321-200402.chr1.NT_022052.2_58523 A/G 2 rs6541625 0 22 11452754 NT_167227.2 24698
ss18339036 SC-CHR6_NA11321-200402.chr1.NT_022052.2_58391 A/C 2 rs4011174 1 22 11452886 NT_167227.2 24830
ss18339033 SC-CHR6_NA11321-200402.chr1.NT_022052.2_58053 A/T 2 rs10458485 0 22 11453224 NT_167227.2 25168
ss18339041 SC-CHR6_NA11321-200402.chr1.NT_077988.2_26044 C/G 2 rs9729610 0 22 12188403 NT_187337.1 160848
ss18339058 SC-CHR6_NA11321-200402.chr1.NT_021937.16_1602997 A/G 2 rs879124377 0 X 78470346 NT_011651.18 16007804
ss18339029 SC-CHR6_NA11321-200402.chr1.NT_077988.2_26192 A/C 2 N.D. N.D.
ss18339042 SC-CHR6_NA11321-200402.chr1.NT_077988.2_26288 C/T 2 N.D. N.D.
ss18339044 SC-CHR6_NA11321-200402.chr1.NT_029860.11_1391930 G/T 2 N.D. N.D.
ss18339049 SC-CHR6_NA11321-200402.chr1.NT_019273.16_6556577 A/G 2 N.D. N.D.
ss18339050 SC-CHR6_NA11321-200402.chr1.NT_019273.16_6556888 A/G 2 N.D. N.D.
30 of 8580 subsnp's starting at ss18339037. ss# starting at ss