NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
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Method Detail
Submitter Method Handle: 1000GENOMES
Submitter Method ID: SEQ
Submitted method description:
Many different callers were used to identify the sites in this set. An integrated call set was created; SNPs, indels and complex short variants were filtered using the SVM method from University of Michigan (part of the GotCloud package) and the SV sites

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
1000GENOMES Frequency Phase3_V1-EAS 144
1000GENOMES Frequency Phase3_V1-EUR 144
1000GENOMES Frequency Phase3_V1-AFR 144
1000GENOMES Frequency Phase3_V1-AMR 144
1000GENOMES Frequency Phase3_V1-SAS 144
1000GENOMES Assay Phase3_V1 141
1000GENOMES Assay 30x_grch38 151