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Method Detail
Submitter Method Handle: TOPMED
Submitter Method ID: FREEZE 5
Submitted method description:
38x average coverage deep whole genome sequencing of over 60,000 individuals,
followed by variant discovery, genotyping and site-level filtering for SNPs
and short indels. This uses the current 'vt' implementation of likelihood-based
variant calling. All sequencing is done from blood DNA, not lymphoblastoid
cell lines (with the exception of NA12878 and NA19238 control samples) and
uses PCR-free library preps (except for < 500 legacy samples sequenced prior
to initiating the project). Sequence data and further description of methods
are available from dbGaP studies with 'TOPMed' in the study name.

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id