NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Method Detail
Submitter Method Handle: SSAHASNP
Submitter Method ID: AACC-200403
Submitted method description:
We aligned the Toronto Chr7 assembly, accessioned as AACC00000000, to build34 of the human genome, available at ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/, using ssahaSNP. The settings for ssahaSNP were such that 9 of the 10 neighboring bases from the ca
ndidate SNP base match (these 10 bases are from the 5 bases on either side of the candidate SNP).

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
SSAHASNP Assay AACC-200403 121

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement