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dbSNP

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Method Detail
Submitter Method Handle: ILLUMINA-UK
Submitter Method ID: ILLUMINA SEQUENCING
Submitted method description:
Approximately 40x average depth of coverage of the sample (human male genome) was generated
using Illumina sequencing (paired 35 base reads). Read pairs were aligned to the reference
(NCBI 36) using ELAND or MAQ. SNP predictions were made by Illumina using the ELAND alignment
and by the Wellcome Trust Sanger Institute using the MAQ alignment. Alignment to the NCBI36.1
reference sequence was used to identify single nucleotide differences from the reference that
are either homozygous or heterozygous in the sequenced individual. A total of 3,612,498 high
confidence SNPs are in the intersection of the two methods (ELAND and MAQ) and are submitted
here.
PARAMETER:

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c1 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c10 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c11 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c12 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c13 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c14 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c15 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c16 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c17 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c18 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c19 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c2 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c20 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c21 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c22 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c3 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c4 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c5 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c6 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c7 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c8 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_c9 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_cX 132
ILLUMINA-UK Genotype ILLUMINA_WTSI:NA18507_cY 132
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_cY 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_cX 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c9 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c8 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c7 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c6 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c5 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c4 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c3 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c22 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c21 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c20 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c2 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c19 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c18 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c17 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c16 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c15 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c14 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c13 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c11 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c1 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c12 130
ILLUMINA-UK Assay ILLUMINA_WTSI:NA18507_c10 130