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Method Detail
Submitter Method Handle: COMPLETE_GENOMICS
Submitter Method ID: COMPLETE GENOMICS SEQUENCING
Submitted method description:
Sequencing was performed using combinatorial probe anchor ligation (cPAL) to
assay patterned nanoarrays of self-assembling DNA nanoballs (DNBs). Reads
were mapped to the human genome reference assembly (NCBI build 36) using
a custom alignment algorithm that accommodates the cPAL/DNB read structure.
Mapped reads were assembled into a best-fit diploid sequence with a custom
software suite employing both Bayesian and de Bruijn graph techniques.
Variations were called through comparison back to reference.

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr1 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr2 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr3 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr4 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr5 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr6 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr7 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr8 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr9 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chrM 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chrX 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chrY 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr10 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr11 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr12 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr13 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr14 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr15 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr16 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr17 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr18 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr19 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr20 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr21 131
COMPLETE_GENOMICS Genotype NA07022_snpinduse_chr22 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr1 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr2 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr3 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr4 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr5 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chrM 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr6 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr7 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr8 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr9 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chrX 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr10 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr11 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr12 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr13 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr14 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr15 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr16 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr17 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr18 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr19 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr20 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr21 131
COMPLETE_GENOMICS Genotype NA19240_snpinduse_chr22 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr1 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr2 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr3 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr4 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr5 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr6 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr7 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr8 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr9 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chrM 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chrX 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chrY 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr10 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr11 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr12 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr13 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr14 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr15 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr16 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr17 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr18 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr19 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr20 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr21 131
COMPLETE_GENOMICS Genotype NA20431_snpinduse_chr22 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr1 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr3 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr4 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr5 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr6 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr7 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr8 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chrY 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chrX 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr1 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr2 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr3 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr4 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr6 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr7 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr9 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr8 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr2 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chrM 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr5 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chrM 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr9 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chrX 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr1 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr2 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr3 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr4 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr5 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr6 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr7 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr8 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr9 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chrM 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chrX 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chrY 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr10 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr11 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr12 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr13 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr14 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr15 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr16 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr17 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr18 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr19 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr20 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr21 131
COMPLETE_GENOMICS Assay NA07022_snpassay_chr22 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr10 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr11 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr12 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr13 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr14 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr15 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr16 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr17 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr18 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr19 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr20 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr21 131
COMPLETE_GENOMICS Assay NA19240_snpassay_chr22 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr10 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr11 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr12 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr13 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr14 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr15 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr16 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr17 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr18 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr19 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr20 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr21 131
COMPLETE_GENOMICS Assay NA20431_snpassay_chr22 131