Calls were made on 90-fold coverage 2x150 PE Illumina HiSeq reads using GATK, FreeBayes, and Pindel, and merged with 50% overlap. A separate set of calls was generated using phase partitioned PacBio data and a method called Phased-SV. Please refer to the
PARAMETER: Illumina standard HiSeq 2500 protocol. PacBio: Standard RSII protocol.