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Method Detail
Submitter Method Handle: TSC-CSHL
Submitter Method ID: TSC-CSHL-31
Submitted method description:
The following method definition consists of one or more
protocols used in The SNP Consortium project by the
participating laboratory CSHL.
See the TSC website (
for a complete list of TSC protocols.
SNP detection protocol TSCM0031 (
Title: SNP detection method using PolyBayes program performed over preselected set of trace files from all participating labs
Lab: Cold Spring Harbor Laboratory
A Bayesian statistical approach (implemented in PolyYayes program) was applied
to clusters of high quality reads representing unique genomic locations. The
method then determined if a part of such multiple alignment contains polimorphic
nucleotides based on quality score of the base call from every sequence
contributing to the cluster

This method was used in the following submission:

Submitter Handle Batch Type Submitter batch id Release build id
TSC-CSHL Assay TSC-CSHL-31_101091916 100
TSC-CSHL Assay TSC-CSHL-31_101091916b 100
TSC-CSHL Assay TSC-CSHL-31_101110816 101
TSC-CSHL Assay TSC-CSHL-31_101110816b 101
TSC-CSHL Assay TSC-CSHL-Sep-19-2002-SNP_SUBMISSION-31b 107