Genomic Characterization of PDX Models for Breast Cancer Brain Metastases

dbGaP Study Accession:  phs001063.v1.p1

List of Variables

Variable accession Variable name Variable description Dataset accession Dataset name
phv00259002.v1.p1 SUBJID Subject ID pht005289.v1.p1 HER2_Positive_Breast_Cancer_Subject
phv00259003.v1.p1 CONSENT Consent group as determined by DAC pht005289.v1.p1 HER2_Positive_Breast_Cancer_Subject
phv00259004.v1.p1 SUBJID Subject ID pht005290.v1.p1 HER2_Positive_Breast_Cancer_Sample
phv00259005.v1.p1 SAMPID Sample ID pht005290.v1.p1 HER2_Positive_Breast_Cancer_Sample
phv00259006.v1.p1 SAMPLE_USE Method in which sample was analyzed
  • Seq_DNA_SNP: SNP genotypes derived from sequence data
  • Seq_DNA_WholeExome: Whole exome sequencing
pht005290.v1.p1 HER2_Positive_Breast_Cancer_Sample
phv00259007.v1.p1 SUBJID De-identified Subject ID pht005291.v1.p1 HER2_Positive_Breast_Cancer_Subject_Phenotypes
phv00259008.v1.p1 sex Gender of participant pht005291.v1.p1 HER2_Positive_Breast_Cancer_Subject_Phenotypes
phv00259009.v1.p1 age_at_surgery Age at surgical resection pht005291.v1.p1 HER2_Positive_Breast_Cancer_Subject_Phenotypes
phv00259010.v1.p1 SAMPID De-identified Sample ID pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259011.v1.p1 ANALYTE_TYPE Sample content analyzed pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259012.v1.p1 IS_TUMOR Whether the sample is tumor pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259013.v1.p1 IS_PDX Whether the sample is from patient-derived xenograft (PDX) pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259014.v1.p1 HISTOLOGICAL_TYPE Cell or tissue type or subtype of sample pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259015.v1.p1 Brain_met_HER2 Brain metastases HER2 status pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259016.v1.p1 Brain_met_ER Brain metastases ER status pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259017.v1.p1 Brain_met_PR Brain metastases PR status pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259018.v1.p1 target_therapy Patient target therapy information before surgery pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259019.v1.p1 chemotherapy Patient chemotherapy information before surgery pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259020.v1.p1 Hormone therapy Patient hormone therapy information before surgery pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes
phv00259021.v1.p1 Radiation Patient radiation information before surgery pht005292.v1.p1 HER2_Positive_Breast_Cancer_Sample_Attributes