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Links from Protein

Items: 5

1.

Rid family hydrolase

The YjgF/YER057c/UK114 family, including a member protein that has been called endoribonuclease L-PSP (perchloric acid-soluble protein), is now called the RidA family, or more generally the Rid family, with subfamilies RidA and Rid1 through Rid7. YjgF from Salmonella enterica deaminates the toxic metabolite 2-amino acrylate and so was renamed RidA (reactive intermediate imine deaminase A). This HMM hits proteins that are members of multiple Rid subfamilies.

Date:
2015-06-22
Family Accession:
NF013228.2
Method:
HMM
2.

RidA family protein

RidA (reactive intermediate/imine deaminase A) family protein similar to 2-iminobutanoate/2-iminopropanoate deaminase, which catalyzes the deamination of enamine/imine intermediates to yield 2-ketobutyrate and ammonia

Date:
2016-09-13
Family Accession:
10794411
Method:
Sparcle
3.
new record, indexing in progress
Family Accession:
4.
new record, indexing in progress
Family Accession:
5.

Rid family detoxifying hydrolase

Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. Some members of this family are designated RidA and are designated 2-iminobutanoate/2-iminopropanoate deaminase (EC 3.5.99.10). For other paralogs, specific activities are less clear. Historically, this protein has been called an inhibitor of protein synthesis initiation, then endoribonuclease L-PSP active on single-stranded mRNA, but citations to those reports are now removed from this HMM.

GO Terms:
Biological Process:
metabolic process (GO:0008152)
Molecular Function:
deaminase activity (GO:0019239)
Date:
2015-01-01
Family Accession:
TIGR00004.1
Method:
HMM
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