The complete cDNA sequence of a type II Trichomonas vaginalis virus

Virology. 2000 Feb 15;267(2):350-9. doi: 10.1006/viro.1999.0129.

Abstract

Trichomonas vaginalis viruses (TVV), which may regulate P270 gene expression in the protozoan pathogen T. vaginalis, are a group of divergent double-stranded (ds) RNA viruses. In the present study, the complete 4674-bp cDNA sequence of a 4.6-kb ds RNA from a newly identified TVV2-1 isolate was determined. The sequence of the plus-strand mRNA contains four open reading frames, which encode overlapping cap and pol genes in the reading frame 2 and reading frame 1, respectively, and two putative serine-threonine-rich basic proteins VP3 and VP4 in the third reading frame. An 85-kDa capsid protein and a 160-kDa CAP-POL fusion protein were identified in crude viruses by Western blotting experiments using antisera raised against gene-specific oligopeptides. In conjunction with the presence of a potential ribosomal slippery heptanucleotide G GGC CCC within the overlap of the cap and pol genes, these observations suggest that the pol gene of TVV2-1 is translated via a -1 ribosomal frameshifting event during translation of the cap gene. Our results also provide insight into the conservation among divergent dsRNA species from TVV and suggest that the genome of TVV2-1 may encode two extra genes in addition to the cap and pol genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Capsid / genetics
  • Cloning, Molecular
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics*
  • DNA-Directed RNA Polymerases / genetics
  • Genome, Viral
  • Models, Molecular
  • Molecular Sequence Data
  • Open Reading Frames
  • RNA Viruses / genetics*
  • RNA Viruses / isolation & purification
  • RNA Viruses / ultrastructure
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Trichomonas vaginalis / virology*

Substances

  • DNA, Complementary
  • RNA, Viral
  • DNA-Directed RNA Polymerases

Associated data

  • GENBANK/AF127178