The IgH locus of the channel catfish, Ictalurus punctatus, contains multiple constant region gene sequences: different genes encode heavy chains of membrane and secreted IgD

J Immunol. 2002 Sep 1;169(5):2488-97. doi: 10.4049/jimmunol.169.5.2488.

Abstract

The delta-chain of catfish IgD was initially characterized as a unique chimeric molecule containing a rearranged VDJ spliced to C micro 1, seven C domain-encoding exons (delta1-delta7), and a transmembrane tail. The presence of cDNA forms showing splicing of delta7 to an exon encoding a secretory tail was interpreted to indicate that membrane (deltam) and secreted (deltas) forms were likely expressed from a single gene by alternative RNA processing. Subsequent cloning and sequence analyses have unexpectedly revealed the presence of three delta C region genes, each linked to a micro gene or pseudogene. The first (IGHD1) is located 1.6 kb 3' of the functional C micro (IGHM1). The second (IGHD3) is positioned immediately downstream of a pseudo C micro (IGHM3P), approximately 725 kb 5' of IGHM1. These two delta genes are highly similar in sequence and each contains a tandem duplication of delta2-delta3-delta4. However, IGHD1 has a terminal exon encoding the transmembrane region, whereas IGHD3 has a single terminal exon encoding a secreted tail. The occurrence of IGHD3 immediately downstream of a micro pseudogene indicates that the putative deltas product may not be expressed as a chimeric micro delta molecule. Western blots and protein sequencing data indicate that an IGHD3-encoded protein is expressed in catfish serum. Thus, catfish deltam transcripts appear to originate from IGHD1, whereas deltas transcripts originate from IGHD3 rather than, as previously inferred, from a single expressed delta gene. The third delta (IGHD2) is associated with a pseudo C micro (IGHM2P); its presence is inferred by Southern blot analyses.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cloning, Molecular / methods
  • Contig Mapping / methods
  • Genes, Immunoglobulin*
  • Genetic Markers / immunology
  • Ictaluridae / genetics*
  • Ictaluridae / immunology*
  • Immunoglobulin Constant Regions / chemistry
  • Immunoglobulin Constant Regions / genetics*
  • Immunoglobulin D / biosynthesis
  • Immunoglobulin D / chemistry
  • Immunoglobulin D / genetics*
  • Immunoglobulin D / isolation & purification
  • Immunoglobulin Heavy Chains / chemistry
  • Immunoglobulin Heavy Chains / genetics*
  • Immunoglobulin delta-Chains / genetics
  • Immunoglobulin mu-Chains / genetics
  • Molecular Sequence Data
  • Multigene Family / genetics*
  • Pseudogenes / immunology
  • Receptors, Antigen, B-Cell / chemistry
  • Receptors, Antigen, B-Cell / genetics*

Substances

  • Genetic Markers
  • Immunoglobulin Constant Regions
  • Immunoglobulin D
  • Immunoglobulin Heavy Chains
  • Immunoglobulin delta-Chains
  • Immunoglobulin mu-Chains
  • Receptors, Antigen, B-Cell

Associated data

  • GENBANK/AF363448
  • GENBANK/AF363449
  • GENBANK/AF363450