Triple decoding of hepatitis C virus RNA by programmed translational frameshifting

Mol Cell Biol. 2003 Mar;23(5):1489-97. doi: 10.1128/MCB.23.5.1489-1497.2003.

Abstract

Ribosomes can be programmed to shift from one reading frame to another during translation. Hepatitis C virus (HCV) uses such a mechanism to produce F protein from the -2/+1 reading frame. We now report that the HCV frameshift signal can mediate the synthesis of the core protein of the zero frame, the F protein of the -2/+1 frame, and a 1.5-kDa protein of the -1/+2 frame. This triple decoding function does not require sequences flanking the frameshift signal and is apparently independent of membranes and the synthesis of the HCV polyprotein. Two consensus -1 frameshift sequences in the HCV type 1 frameshift signal facilitate ribosomal frameshifts into both overlapping reading frames. A sequence which is located immediately downstream of the frameshift signal and has the potential to form a double stem-loop structure can significantly enhance translational frameshifting in the presence of the peptidyl-transferase inhibitor puromycin. Based on these results, a model is proposed to explain the triple decoding activities of the HCV ribosomal frameshift signal.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Blotting, Western
  • Codon
  • Dose-Response Relationship, Drug
  • Frameshift Mutation*
  • Genes, Reporter
  • Hepacivirus / genetics*
  • Humans
  • Immunoenzyme Techniques
  • Models, Genetic
  • Molecular Sequence Data
  • Mutation
  • Open Reading Frames
  • Peptidyl Transferases / antagonists & inhibitors
  • Plasmids / metabolism
  • Precipitin Tests
  • Protein Biosynthesis*
  • Puromycin / pharmacology
  • RNA, Viral / genetics*
  • Transcription, Genetic
  • Transfection
  • Tumor Cells, Cultured

Substances

  • Codon
  • RNA, Viral
  • Puromycin
  • Peptidyl Transferases