The complete genome sequence of a new necrovirus isolated from Olea europaea L

Arch Virol. 2005 Apr;150(4):815-23. doi: 10.1007/s00705-004-0453-1. Epub 2004 Dec 10.

Abstract

The complete nucleotide sequence of a virus isolated from Olea europaea L. (GP isolate), previously identified as an isolate of Tobacco necrosis virus D (TNV-D) based on its coat protein sequence, was determined. The viral RNA genome consists of 3683 nucleotides and contains five open reading frames. The putative RNA-dependent RNA polymerase shows 91.2% amino acid identity with that of an isolate of Olive latent virus 1 (OLV-1) and the coat protein reveals highest sequence identity with that of TNV-D. Based on the deduced genome organization and phylogenetic analysis of predicted functional translation products with that of other necroviruses, the GP isolate genome appears to represent an example of a new virus arisen by gene exchange and is proposed to be a new necrovirus, provisionally named Olive mild mosaic virus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Asteraceae / virology*
  • Base Sequence
  • Capsid Proteins / chemistry
  • Capsid Proteins / genetics
  • DNA Primers
  • Genome, Viral*
  • Molecular Sequence Data
  • Phylogeny
  • Tombusviridae / classification
  • Tombusviridae / genetics*
  • Tombusviridae / isolation & purification

Substances

  • Capsid Proteins
  • DNA Primers

Associated data

  • GENBANK/AY616760