Complete nucleotide sequences and genome characterization of double-stranded RNA 1 and RNA 2 in the Raphanus sativus-root cv. Yidianhong [corrected]

Arch Virol. 2006 May;151(5):849-59. doi: 10.1007/s00705-005-0685-8. Epub 2005 Dec 22.

Abstract

Four distinct double-stranded (ds) RNA bands were extracted from leaves of Raphanus sativus-root cv. Yidianhong [corrected] with yellowing at the leaf edge in China. Purified viral particles of 28-30 nm in diameter contained dsRNA segments with the same number and mobility as these extracted directly from radish leaves. The two major dsRNA segments, namely RasR 1 and RasR 2, were 1866 and 1791 bp in length, respectively. Computer analysis predicted that they both contained a single open reading frame (ORF) on their plus-stranded RNA, putatively encoding a RNA dependent RNA polymerase and a capsid protein similar to that encoded by members of the family Partitiviridae. In addition, both RasR 1 and RasR 2 were highly conserved at the 5' untranslated regions (UTR) and had an adenosine-uracil rich stretch at the 3' UTR, with an identical terminal motif (5'-AAAAUAAAACC-3'). Taken together, these results suggest that the two major dsRNA segments constitute the genome of a partitivirus infecting radish.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics
  • 5' Untranslated Regions / genetics
  • Amino Acid Motifs
  • Base Sequence
  • Capsid Proteins / genetics
  • China
  • Conserved Sequence
  • DNA, Complementary
  • Genome, Viral*
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Plant Diseases / virology
  • Plant Leaves / virology
  • Plant Viruses / genetics*
  • RNA Viruses / genetics*
  • RNA, Double-Stranded / chemistry
  • RNA, Double-Stranded / genetics*
  • RNA, Double-Stranded / isolation & purification
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification
  • RNA-Dependent RNA Polymerase / genetics
  • Raphanus / virology*
  • Sequence Alignment
  • Sequence Analysis, RNA
  • Sequence Homology

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Capsid Proteins
  • DNA, Complementary
  • RNA, Double-Stranded
  • RNA, Viral
  • RNA-Dependent RNA Polymerase

Associated data

  • GENBANK/AY949985
  • GENBANK/DQ181926