Affinity purification of Ypt6 effectors and identification of TMF/ARA160 as a Rab6 interactor

Methods Enzymol. 2005:403:599-607. doi: 10.1016/S0076-6879(05)03052-1.

Abstract

Rab/Ypt GTPases are key regulators of intracellular traffic in eukaryotic cells. One important function of Rab/Ypts is the nucleotide-dependent recruitment of downstream effector molecules onto the membrane of organelles. In budding yeast Ypt6 is required for recycling of membrane proteins from endosomes back to the Golgi. A biochemical approach based on the affinity purification of Ypt6:GTP-interacting proteins from yeast cytosol led to the identification of two conserved Ypt6 effectors, the tetrameric VFT complex and Sgm1. The mammalian homolog of Sgm1, TMF/ARA160, contains a short conserved coiled-coil motif that is sufficient for the binding to the three mammalian orthologs of Ypt6, Rab6A, Rab6A', and Rab6B.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing / metabolism*
  • Chromatography, Affinity / methods*
  • DNA-Binding Proteins / metabolism*
  • Monomeric GTP-Binding Proteins / isolation & purification*
  • Monomeric GTP-Binding Proteins / metabolism
  • Saccharomyces cerevisiae Proteins / isolation & purification*
  • Saccharomyces cerevisiae Proteins / metabolism
  • Transcription Factors / metabolism*
  • rab GTP-Binding Proteins / metabolism*

Substances

  • Adaptor Proteins, Signal Transducing
  • DNA-Binding Proteins
  • Rab6 protein
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors
  • TMF1 protein, human
  • Monomeric GTP-Binding Proteins
  • YPT6 protein, S cerevisiae
  • rab GTP-Binding Proteins