Molecular analysis of a full-length sequence of a new yam badnavirus from Dioscorea sansibarensis

Arch Virol. 2007;152(4):819-25. doi: 10.1007/s00705-006-0888-7. Epub 2007 Jan 3.

Abstract

Badnavirus-like particles were observed by ISEM in viral preparations from yam (Dioscorea sansibarensis) leaves from Benin. Use of the viral preparation as template for PCR amplification with badnavirus-specific primers gave rise to a 579-bp product with most nucleotide identity (70.8%) to Dioscorea alata bacilliform virus (DaBV, Accession numbers X94575-X94582), the only other yam badnavirus sequenced to date. A full-length badnavirus sequence was generated, which consisted of 7261 nucleotides with a typical Badnavirus genome organisation. The full-length sequence shared most identity (61.9%) to DaBV (Accession numbers X94575-X94582) and hence represents a member of a new badnavirus species termed Dioscorea sansibarensis bacilliform virus (DsBV).

MeSH terms

  • Badnavirus / classification
  • Badnavirus / genetics*
  • Base Sequence
  • Benin
  • DNA, Viral / chemistry
  • DNA, Viral / genetics*
  • Dioscorea / virology*
  • Gene Order
  • Genome, Viral*
  • Molecular Sequence Data
  • Phylogeny
  • Plant Diseases / virology
  • Sequence Analysis, DNA
  • Sequence Homology
  • Synteny

Substances

  • DNA, Viral

Associated data

  • GENBANK/DQ822073
  • GENBANK/DQ822074