Complete nucleotide sequence of a putative new cytorhabdovirus infecting lettuce

Arch Virol. 2008;153(1):81-92. doi: 10.1007/s00705-007-1071-5. Epub 2007 Oct 18.

Abstract

The full-length nucleotide sequence of the genomic RNA of a new cytorhabdovirus infecting lettuce was determined. Six open reading frames were found in the antigenomic sequence of the 12,926-nt negative-sense viral RNA genome. The genomic organisation was similar to that of lettuce necrotic yellows virus (LNYV), the type member of the genus Cytorhabdovirus: 3'-N-P-3-M-G-L-5', where N is the capsid protein gene, P the putative phosphoprotein gene, 3 a gene coding for a putative protein of unknown function, M the putative matrix protein gene, G the glycoprotein gene, and L the putative polymerase gene. Amino acid sequence comparison with the corresponding sequences of other rhabdoviruses revealed the closest relationship to LNYV, with identities ranging from 41% for the matrix proteins and 65% for the L polymerase proteins. These results indicate that this virus may be a member of a new cytorhabdovirus species, for which the name Lettuce yellow mottle virus (LYMoV) is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Genes, Viral
  • Genome, Viral*
  • Lactuca / virology*
  • Molecular Sequence Data
  • Mosaic Viruses / genetics
  • Plant Viruses / genetics*
  • RNA, Viral / analysis
  • RNA, Viral / genetics
  • Rhabdoviridae / classification*
  • Rhabdoviridae / genetics*
  • Rhabdoviridae / metabolism
  • Sequence Analysis, DNA
  • Viral Matrix Proteins / genetics
  • Viral Proteins / genetics

Substances

  • RNA, Viral
  • Viral Matrix Proteins
  • Viral Proteins

Associated data

  • GENBANK/EF687738