Molecular and phylogenetic analyses of bovine rhinovirus type 2 shows it is closely related to foot-and-mouth disease virus

Virology. 2008 Apr 10;373(2):411-25. doi: 10.1016/j.virol.2007.12.019. Epub 2008 Jan 16.

Abstract

Bovine rhinovirus 2 (BRV2), a causative agent of respiratory disease in cattle, is tentatively assigned to the genus Rhinovirus in the family Picornaviridae. A nearly full-length cDNA of the BRV2 genome was cloned and the nucleotide sequence determined. BRV2 possesses a putative leader proteinase, a small 2A protein and a poly(C) tract, which are characteristic of aphthoviruses. Alignment of BRV-2 and FMDV polyproteins showed that 41% of amino acids were identical within the P1 region. Furthermore, 2A, 2C, 3B(3), 3C and 3D proteins are as much as 67%, 52%, 52%, 50%, and 64% identical, respectively. BRV2 leader protein is rapidly released from the viral polyprotein and cleaves eIF4G at a rate similar to FMDV leader proteinase, suggesting a functional relationship between the leader protein in these viruses. The results suggest that BRV2 is closely related to FMDV and should therefore be considered as a new species within the genus Aphthovirus.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cattle
  • Cells, Cultured
  • DNA Primers / genetics
  • Eukaryotic Initiation Factor-4G / metabolism
  • Foot-and-Mouth Disease Virus / classification*
  • Foot-and-Mouth Disease Virus / genetics*
  • Foot-and-Mouth Disease Virus / physiology
  • Genome, Viral
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phylogeny
  • Protein Biosynthesis
  • RNA, Untranslated / chemistry
  • RNA, Untranslated / genetics
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • Rhinovirus / classification*
  • Rhinovirus / genetics*
  • Rhinovirus / physiology
  • Sequence Homology, Amino Acid
  • Species Specificity
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • DNA Primers
  • Eukaryotic Initiation Factor-4G
  • RNA, Untranslated
  • RNA, Viral
  • Viral Proteins

Associated data

  • GENBANK/EU236594