Structure and function of HCV IRES domains

Virus Res. 2009 Feb;139(2):166-71. doi: 10.1016/j.virusres.2008.06.004. Epub 2008 Jul 31.

Abstract

The HCV IRES is a highly structured RNA which mediates cap-independent translation initiation in higher eukaryotes. This function is encoded in conserved structural motifs in the two major domains of HCV and HCV-like IRESs, which play crucial and distinct roles along the initiation pathway. In this review, I discuss structural features of IRES domains and how these RNA motifs function as RNA-based initiation factors to form 48S initiation complexes and 80S ribosomes with only a subset of canonical, protein-based eukaryotic initiation factors.

Publication types

  • Review

MeSH terms

  • Eukaryotic Initiation Factor-3 / chemistry
  • Hepacivirus / genetics*
  • Nucleic Acid Conformation*
  • Peptide Chain Initiation, Translational
  • Peptide Initiation Factors / genetics
  • RNA, Viral / chemistry*
  • Ribosomes / chemistry*

Substances

  • Eukaryotic Initiation Factor-3
  • Peptide Initiation Factors
  • RNA, Viral