Molecular characterization of a novel adult diarrhoea rotavirus strain J19 isolated in China and its significance for the evolution and origin of group B rotaviruses

J Gen Virol. 2008 Oct;89(Pt 10):2622-2629. doi: 10.1099/vir.0.2008/001933-0.

Abstract

The complete genome of a novel adult diarrhoea rotavirus strain J19 was cloned and sequenced using an improved single-primer sequence-independent method. The complete genome is 17,961 bp and is AU-rich (66.49 %). Northern blot analysis and genomic sequence analysis indicated that segments 1-11 encode 11 viral proteins, respectively. Protein alignments with the corresponding proteins of J19 with B219, and groups A, B and C rotaviruses, produced higher per cent sequence identities to B219. Among groups A, B and C rotaviruses, 10 proteins from group B rotaviruses exhibited slightly higher amino acid sequence identity to the J19 proteins, but proteins of J19 showed low amino acid sequence identity with groups A and C rotaviruses. Construction of unrooted phylogenetic trees using a set of known proteins and representatives of three known rotavirus groups revealed that six structural proteins were positioned close to B219 and the basal nodes of groups A, B and C lineages, although with a preferred association with group B lineages. Phylogenetic analysis of the five non-structural proteins showed a similar trend. The results of the serological analysis, protein sequence analysis and phylogenetic analysis suggested that J19 would be a novel rotavirus strain with great significance to the evolution and origin of group B rotaviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Cell Line
  • China / epidemiology
  • Diarrhea / epidemiology*
  • Diarrhea / virology*
  • Evolution, Molecular*
  • Genome, Viral
  • Humans
  • Molecular Sequence Data
  • Phylogeny
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Rotavirus Infections / epidemiology
  • Rotavirus Infections / virology
  • Sequence Analysis, DNA
  • Viral Nonstructural Proteins / chemistry
  • Viral Nonstructural Proteins / genetics
  • Viral Structural Proteins / chemistry
  • Viral Structural Proteins / genetics

Substances

  • Viral Nonstructural Proteins
  • Viral Structural Proteins

Associated data

  • GENBANK/AAZ03485
  • GENBANK/AAZ03486
  • GENBANK/AAZ03487
  • GENBANK/AAZ03488
  • GENBANK/AAZ03489
  • GENBANK/AAZ03490
  • GENBANK/AAZ03491
  • GENBANK/AAZ03492
  • GENBANK/AAZ03493
  • GENBANK/AAZ03494
  • GENBANK/AAZ03495
  • GENBANK/DQ113897
  • GENBANK/DQ113898
  • GENBANK/DQ113899
  • GENBANK/DQ113900
  • GENBANK/DQ113901
  • GENBANK/DQ113902
  • GENBANK/DQ113903
  • GENBANK/DQ113904
  • GENBANK/DQ113905
  • GENBANK/DQ113906
  • GENBANK/DQ113907