Complete sequence of the genome of avian paramyxovirus type 9 and comparison with other paramyxoviruses

Virus Res. 2009 Jun;142(1-2):10-8. doi: 10.1016/j.virusres.2008.12.016. Epub 2009 Jan 29.

Abstract

The complete genome consensus sequence was determined for avian paramyxovirus (APMV) serotype 9 prototype strain PMV-9/domestic Duck/New York/22/78. The genome is 15,438 nucleotides (nt) long and encodes six non-overlapping genes in the order of 3'-N-P/V/W-M-F-HN-L-5' with intergenic regions of 0-30 nt. The genome length follows the "rule of six" and contains a 55-nt leader sequence at the 3' end and a 47-nt trailer sequence at the 5' end. The cleavage site of the F protein is I-R-E-G-R-I downward arrowF, which does not conform to the conventional cleavage site of the ubiquitous cellular protease furin. The virus required exogenous protease for in vitro replication and grew only in a few established cell lines, indicating a restricted host range. Alignment and phylogenetic analysis of the predicted amino acid sequences of APMV-9 proteins with the cognate proteins of viruses of all five genera of family Paramyxoviridae showed that APMV-9 is more closely related to APMV-1 than to other APMVs. The mean death time in embryonated chicken eggs was found to be more than 120h, indicating APMV-9 to be avirulent for chickens.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Avulavirus / chemistry
  • Avulavirus / genetics*
  • Base Sequence
  • Chick Embryo
  • Genome, Viral*
  • Molecular Sequence Data
  • Paramyxoviridae / chemistry
  • Paramyxoviridae / classification
  • Paramyxoviridae / genetics*
  • Phylogeny
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Viral Proteins / chemistry
  • Viral Proteins / genetics

Substances

  • Viral Proteins

Associated data

  • GENBANK/EU910942