5'-triphosphate RNA requires base-paired structures to activate antiviral signaling via RIG-I

Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12067-72. doi: 10.1073/pnas.0900971106. Epub 2009 Jul 2.

Abstract

The ATPase retinoid acid-inducible gene (RIG)-I senses viral RNA in the cytoplasm of infected cells and subsequently activates cellular antiviral defense mechanisms. RIG-I recognizes molecular structures that discriminate viral from host RNA. Here, we show that RIG-I ligands require base-paired structures in conjunction with a free 5'-triphosphate to trigger antiviral signaling. Hitherto unavailable chemically synthesized 5'-triphosphate RNA ligands do not trigger RIG-I-dependent IFN production in cells, and they are unable to trigger the ATPase activity of RIG-I without a base-paired stretch. Consistently, immunostimulatory RNA from cells infected with a virus recognized by RIG-I is sensitive to double-strand, but not single-strand, specific RNases. In vitro, base-paired stretches and the 5'-triphosphate bind to distinct sites of RIG-I and synergize to trigger the induction of signaling competent RIG-I multimers. Strengthening our model of a bipartite molecular pattern for RIG-I activation, we show that the activity of supposedly "single-stranded" 5'-triphosphate RNAs generated by in vitro transcription depends on extended and base-paired by-products inadvertently, but commonly, produced by this method. Together, our findings accurately define a minimal molecular pattern sufficient to activate RIG-I that can be found in viral genomes or transcripts.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / metabolism
  • Animals
  • Base Pairing*
  • Binding Sites
  • Cell Line
  • DNA-Directed RNA Polymerases / metabolism
  • Humans
  • Ligands
  • Mice
  • Protein Binding
  • Protein Multimerization
  • RNA / chemistry*
  • RNA / immunology*
  • Receptors, Pattern Recognition / metabolism
  • Receptors, Retinoic Acid / metabolism*
  • Signal Transduction / immunology*
  • Transcription, Genetic
  • Viral Proteins / metabolism
  • Viruses / immunology*

Substances

  • Ligands
  • PLAAT4 protein, human
  • Receptors, Pattern Recognition
  • Receptors, Retinoic Acid
  • Viral Proteins
  • RNA
  • bacteriophage T7 RNA polymerase
  • DNA-Directed RNA Polymerases
  • Adenosine Triphosphatases