Complete genome sequence of avian paramyxovirus-3 strain Wisconsin: evidence for the existence of subgroups within the serotype

Virus Res. 2010 Apr;149(1):78-85. doi: 10.1016/j.virusres.2009.12.015. Epub 2010 Jan 15.

Abstract

The complete consensus genome sequence was determined for avian paramyxovirus (APMV) serotype 3 strain Wisconsin. The genome is 16,182 nucleotides (nt) in length, consisting of six non-overlapping genes in the order of 3'-N-P/V/W-M-F-HN-L-5', with a 55-nt leader at its 3' end and a 681-nt trailer at its 5' end. Comparison of the APMV-3 strain Wisconsin nt and the aggregate predicted amino acid (aa) sequences with those of APMV-3 strain Netherlands revealed 67% and 78%, identity, respectively. The nt and aa sequence identities between the two APMV-3 strains were lower than between the two antigenic subgroups of human respiratory syncytial virus (81% and 88% identity, respectively) and the two subgroups of human metapeumovirus (80% and 90% identity, respectively). Reciprocal cross-hemagglutination inhibition and cross-neutralization assays using post-infection sera from chickens indicated that strains Wisconsin and Netherlands are highly related antigenically, with only a 2- to 4-fold difference in antibody reactivity between the homologous and heterologous strains. Taken together, our results indicate that the two APMV-3 strains represent a single serotype with two subgroups that differ substantially based on nt and aa sequences, but with only a modest antigenic difference.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Animals
  • Antibodies, Neutralizing / immunology
  • Antibodies, Viral / immunology
  • Avulavirus / classification*
  • Avulavirus / genetics*
  • Avulavirus / immunology
  • Cell Line
  • Chick Embryo
  • Cluster Analysis
  • Cross Reactions
  • Genes, Viral
  • Genome, Viral*
  • Genotype
  • Hemagglutination Inhibition Tests
  • Humans
  • Molecular Sequence Data
  • Neutralization Tests
  • Phylogeny
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Antibodies, Neutralizing
  • Antibodies, Viral
  • RNA, Viral

Associated data

  • GENBANK/EU782025