Structural and functional studies of CCAAT/enhancer binding sites within the human immunodeficiency virus type 1 subtype C LTR

Biomed Pharmacother. 2010 Dec;64(10):672-80. doi: 10.1016/j.biopha.2010.09.007. Epub 2010 Sep 25.

Abstract

Human immunodeficiency virus type 1 (HIV-1) subtype C, which is most predominant in sub-Saharan Africa as well as in Asia and India, is the most prevalent subtype worldwide. A large number of transcription factor families have been shown to be involved in regulating HIV-1 gene expression in T lymphocytes and cells of the monocyte-macrophage lineage. Among these, proteins of the CCAAT/enhancer binding protein (C/EBP) family are of particular importance in regulating HIV-1 gene expression within cells of the monocytic lineage during the course of hematologic development and cellular activation. Few studies have examined the role of C/EBPs in long terminal repeat (LTR)-directed viral gene expression of HIV-1 subtypes other than subtype B. Within subtype B viruses, two functional C/EBP sites located upstream of the TATA box are required for efficient viral replication in cells of the monocyte-macrophage lineage. We report the identification of three putative subtype C C/EBP sites, upstream site 1 and 2 (C-US1 and C-US2) and downstream site 1 (C-DS1). C-US1 and C-DS1 were shown to form specific DNA-protein complexes with members of the C/EBP family (C/EBPα, β, and δ). Functionally, within the U-937 monocytic cell line, subtype B and C LTRs were shown to be equally responsive to C/EBPβ-2, although the basal activity of subtype C LTRs appeared to be higher. Furthermore, the synergistic interaction between C/EBPβ-2 and Tat with the subtype C LTR was also observed in U-937 cells as previously demonstrated with the subtype B LTR.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Base Sequence
  • Binding Sites
  • CCAAT-Enhancer-Binding Proteins / genetics*
  • CCAAT-Enhancer-Binding Proteins / metabolism*
  • Cell Line
  • Gene Expression Regulation, Viral
  • HIV Long Terminal Repeat*
  • HIV-1 / genetics*
  • HIV-1 / metabolism*
  • Humans
  • Molecular Sequence Data
  • Monocyte-Macrophage Precursor Cells / physiology
  • Monocyte-Macrophage Precursor Cells / virology
  • Protein Binding
  • Sequence Alignment
  • Sequence Analysis, DNA
  • T-Lymphocytes / physiology
  • T-Lymphocytes / virology
  • TATA Box / genetics
  • Transcription, Genetic
  • Transcriptional Activation
  • U937 Cells
  • Virus Replication
  • tat Gene Products, Human Immunodeficiency Virus / genetics

Substances

  • CCAAT-Enhancer-Binding Proteins
  • tat Gene Products, Human Immunodeficiency Virus