Ikaros interacts with P-TEFb and cooperates with GATA-1 to enhance transcription elongation

Nucleic Acids Res. 2011 May;39(9):3505-19. doi: 10.1093/nar/gkq1271. Epub 2011 Jan 17.

Abstract

Ikaros is associated with both gene transcriptional activation and repression in lymphocytes. Ikaros acts also as repressor of human γ-globin (huγ-) gene transcription in fetal and adult erythroid cells. Whether and eventually, how Ikaros can function as a transcriptional activator in erythroid cells remains poorly understood. Results presented herein demonstrate that Ikaros is a developmental-specific activator of huγ-gene expression in yolk sac erythroid cells. Molecular analysis in primary cells revealed that Ikaros interacts with Gata-1 and favors Brg1 recruitment to the human β-globin Locus Control Region and the huγ-promoters, supporting long-range chromatin interactions between these regions. Additionally, we demonstrate that Ikaros contributes to transcription initiation and elongation of the huγ-genes, since it is not only required for TBP and RNA Polymerase II (Pol II) assembly at the huγ-promoters but also for conversion of Pol II into the elongation-competent phosphorylated form. In agreement with the latter, we show that Ikaros interacts with Cyclin-dependent kinase 9 (Cdk9), which contributes to efficient transcription elongation by phosphorylating the C-terminal domain of the large subunit of Pol II on Serine 2, and favours Cdk9 recruitment to huγ-promoters. Our results show that Ikaros exerts dual functionality during gene activation, by promoting efficient transcription initiation and elongation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Cyclin-Dependent Kinase 9 / metabolism*
  • DNA Helicases / metabolism
  • Erythroid Cells / metabolism*
  • GATA1 Transcription Factor / metabolism*
  • Humans
  • Ikaros Transcription Factor / genetics
  • Ikaros Transcription Factor / metabolism*
  • Locus Control Region
  • Mice
  • Mice, Knockout
  • Nuclear Proteins / metabolism
  • Positive Transcriptional Elongation Factor B / metabolism
  • Promoter Regions, Genetic
  • RNA Polymerase II / metabolism
  • Transcription Factors / metabolism
  • Transcription, Genetic
  • Transcriptional Activation*
  • Yolk Sac / anatomy & histology
  • Yolk Sac / growth & development
  • gamma-Globulins / genetics
  • gamma-Globulins / metabolism

Substances

  • GATA1 Transcription Factor
  • Nuclear Proteins
  • Transcription Factors
  • Zfpn1a1 protein, mouse
  • gamma-Globulins
  • Ikaros Transcription Factor
  • Positive Transcriptional Elongation Factor B
  • Cyclin-Dependent Kinase 9
  • RNA Polymerase II
  • Smarca4 protein, mouse
  • DNA Helicases