Sequence analysis and evolutionary perspectives of ROB-1 beta-lactamase

Antimicrob Agents Chemother. 1990 Jul;34(7):1354-9. doi: 10.1128/AAC.34.7.1354.

Abstract

The nucleotide sequence of the ROB-1 beta-lactamase gene from Haemophilus influenzae plasmid RRob was determined. The structural gene encodes a polypeptide of 305 amino acids, with an estimated molecular mass of 30,424 for the mature form of the protein. The ROB-1 gene showed low homologies with other beta-lactamases at the nucleic acid level. By using two statistical computer methods, assessment of the extent of similarity between ROB-1 and other known beta-lactamase amino acid sequences suggested that ROB-1 is a class A enzyme. Alignment of class A beta-lactamases with ROB-1 identified conserved residues. The use of a mutation matrix for detecting distance relationships indicated that ROB-1 has higher values and homologies with beta-lactamases of gram-positive bacteria, giving insight into its ancestry and divergence.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Biological Evolution
  • Cloning, Molecular
  • Computers
  • DNA, Bacterial / analysis*
  • Escherichia coli / genetics*
  • Genes
  • Genes, Bacterial
  • Molecular Sequence Data
  • Nucleotides / analysis
  • Plasmids
  • beta-Lactamases / genetics*

Substances

  • DNA, Bacterial
  • Nucleotides
  • beta-Lactamases

Associated data

  • GENBANK/X13597