Detection and characterisation of two novel vitiviruses infecting Actinidia

Arch Virol. 2012 Apr;157(4):713-22. doi: 10.1007/s00705-011-1219-1. Epub 2012 Jan 25.

Abstract

Two co-infecting novel vitiviruses from Actinidia chinensis were identified from mechanically inoculated Nicotiana occidentalis. Both virus genomes were sequenced and share 64% nucleotide identity. Their overall structure is typical of vitiviruses, with five open reading frames (ORFs) and a polyadenylated 3' end. Open reading frame 4 (ORF4) encodes the coat protein, the most conserved gene of the vitiviruses, in which they share 75% amino acid identity, 61-68% with grapevine virus B, 55-59% with grapevine virus A, and 37-42% with grapevine virus E. Based on the molecular criteria for species demarcation in the family Betaflexiviridae, these are two novel viruses, tentatively named Actinidia virus A and Actinidia virus B.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinidia / virology*
  • Coinfection
  • Flexiviridae / classification*
  • Flexiviridae / genetics
  • Flexiviridae / isolation & purification*
  • Gene Order
  • Molecular Sequence Data
  • Nicotiana / virology
  • Open Reading Frames
  • Plant Diseases / virology*
  • RNA, Viral / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid

Substances

  • RNA, Viral

Associated data

  • GENBANK/JN427014
  • GENBANK/JN427015
  • RefSeq/NC_016404