Complete genome organization of American hop latent virus and its relationship to carlaviruses

Arch Virol. 2012 Jul;157(7):1403-6. doi: 10.1007/s00705-012-1312-0. Epub 2012 Apr 17.

Abstract

The complete genomic sequence of American hop latent virus (AHLV; genus Carlavirus) was determined. The genome consists of 8,601 nucleotides plus a 3'-polyadenylate tail. The genome encompasses six potential open reading frames (ORF) in the positive sense, and their organization is typical of other carlaviruses. Analysis of the coat protein coding sequence at both the nucleic acid level and the amino acid level indicates that AHLV is only remotely related to the other carlaviruses known to infect common hop. Polyclonal antibodies were produced against the bacterially expressed coat protein of AHLV. These antibodies differentiated between AHLV and other carlaviruses of hop.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antibodies, Viral / biosynthesis
  • Base Sequence
  • Capsid Proteins / chemistry
  • Capsid Proteins / genetics
  • Capsid Proteins / immunology
  • Carlavirus / classification
  • Carlavirus / genetics*
  • Chenopodium quinoa / virology
  • Gene Expression Regulation, Viral / physiology
  • Genome, Viral
  • Humulus / virology
  • Likelihood Functions
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • RNA, Viral / genetics*
  • Rabbits

Substances

  • Antibodies, Viral
  • Capsid Proteins
  • RNA, Viral

Associated data

  • GENBANK/JQ245696
  • GENBANK/JQ728538