Yamadazyma siamensis sp. nov., Yamadazyma phyllophila sp. nov. and Yamadazyma paraphyllophila sp. nov., three novel yeast species isolated from phylloplane in Thailand and Taiwan

Antonie Van Leeuwenhoek. 2013 Apr;103(4):777-88. doi: 10.1007/s10482-012-9860-6. Epub 2012 Dec 4.

Abstract

Four strains representing three novel anamorphic yeast species were isolated from the external surface of sugarcane leaves (DMKU-RK254(T)), corn leaves (DMKU-RK548(T)), bean leaves (K129) in Thailand and hengchun pencilwood leaves (TrB1-1(T)) in Taiwan. On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics, the sequence analysis of the D1/D2 region of the large subunit (LSU) rRNA gene, the internal transcribed spacer (ITS) region, the actin gene (ACT1) and the elongation factor 2 gene (EF2), the four strains were determined to represent novel Yamadazyma species although formation of ascospores was not observed. Strain DMKU-RK254(T) was determined to be related to Candida diddensiae, Candida naeodendra and Candida kanchanaburiensis but with 1.8, 1.8 and 2.0 % nucleotide substitutions in the D1/D2 region of the LSU rRNA gene, respectively. It was assigned to Yamadazyma siamensis sp. nov. (type strain DMKU-RK254(T) = BCC 50730(T) = NBRC 108901(T) = CBS 12573(T)). The sequences of the D1/D2 region of the LSU rRNA gene, the ITS region, ACT1 gene and EF2 gene of two strains (DMKU-RK548(T) and K129) were identical but differed from that of strain TrB1-1(T) by 0.6, 1.0, 3.3 and 5.9 % nucleotide substitutions, respectively. Therefore, the two strains (DMKU-RK548(T) and K129) and strain TrB1-1(T) were assigned to be two separate species. The closest species in terms of pairwise sequences similarity of the D1/D2 region to the two novel species was Yamadazyma philogaea but with 1.1-1.7 % nucleotide substitutions. The two strains (DMKU-RK548(T) and K129) were assigned to Yamadazyma phyllophila sp. nov. (type strain DMKU-RK548(T) = BCC 50736(T) = NBRC 108906(T) = CBS 12572(T)) and the strain TrB1-1(T) was named Yamadazyma paraphyllophila sp. nov. (type strain TrB1-1(T) = BCRC 23030(T) = CCTCC AY 204005(T) = CBS 9928(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cluster Analysis
  • DNA, Fungal / chemistry
  • DNA, Fungal / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fabaceae / microbiology
  • Genes, rRNA
  • Molecular Sequence Data
  • Mycological Typing Techniques
  • Phylogeny
  • Plant Leaves / microbiology*
  • RNA, Fungal / genetics
  • RNA, Ribosomal / genetics
  • Saccharomycetales / classification*
  • Saccharomycetales / genetics
  • Saccharomycetales / isolation & purification*
  • Saccharomycetales / physiology
  • Saccharum / microbiology
  • Sequence Analysis, DNA
  • Taiwan
  • Thailand
  • Zea mays / microbiology

Substances

  • DNA, Fungal
  • DNA, Ribosomal
  • RNA, Fungal
  • RNA, Ribosomal
  • RNA, ribosomal, 26S

Associated data

  • GENBANK/AB734046
  • GENBANK/AB734047
  • GENBANK/AB734048
  • GENBANK/AB734049
  • GENBANK/AB734050
  • GENBANK/AB734051
  • GENBANK/AB761312
  • GENBANK/AB761313
  • GENBANK/AB761314
  • GENBANK/AB761315
  • GENBANK/AB761316
  • GENBANK/AB761317