Human LIGIV is synthetically lethal with the loss of Rad54B-dependent recombination and is required for certain chromosome fusion events induced by telomere dysfunction

Nucleic Acids Res. 2013 Feb 1;41(3):1734-49. doi: 10.1093/nar/gks1326. Epub 2012 Dec 28.

Abstract

Classic non-homologous end joining (C-NHEJ) is the predominant DNA double-strand break repair pathway in humans. Although seven genes Ku70, Ku86, DNA-PK(cs), Artemis, DNA Ligase IV (LIGIV), X-ray cross-complementing group 4 and XRCC4-like factor are required for C-NHEJ, several of them also have ancillary functions. For example, Ku70:Ku86 possesses an essential telomere maintenance activity. In contrast, LIGIV is believed to function exclusively in C-NHEJ. Moreover, a viable LIGIV-null human B-cell line and LIGIV-reduced patient cell lines have been described. Together, these observations suggest that LIGIV (and hence C-NHEJ), albeit important, is nonetheless dispensable, whereas Ku70:Ku86 and telomere maintenance are essential. To confirm this hypothesis, we inactivated LIGIV in the epithelial human cell line, HCT116. The resulting LIGIV-null cell line was viable, verifying that the gene and C-NHEJ are not essential. However, functional inactivation of RAD54B, a key homologous recombination factor, in the LIGIV-null background yielded no viable clones, suggesting that the combined absence of RAD54B/homologous recombination and C-NHEJ is synthetically lethal. Finally, we demonstrate that LIGIV is differentially required for certain chromosome fusion events induced by telomere dysfunction-used for those owing to the overexpression of a dominant negative version of telomere recognition factor 2, but not used for those owing to absence of Ku70:Ku86.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Nuclear / genetics
  • Cell Line, Tumor
  • Cell Proliferation
  • Chromatids
  • Chromosome Aberrations*
  • DNA Damage
  • DNA End-Joining Repair*
  • DNA Helicases / genetics*
  • DNA Ligase ATP
  • DNA Ligases / genetics
  • DNA Ligases / metabolism
  • DNA Ligases / physiology*
  • DNA-Binding Proteins / genetics
  • Gene Targeting
  • Genomic Instability
  • Humans
  • Ku Autoantigen
  • Mutation
  • Nuclear Proteins / genetics*
  • Recombination, Genetic
  • Recombinational DNA Repair
  • Telomere / physiology*
  • Telomere Homeostasis
  • Telomeric Repeat Binding Protein 2 / metabolism

Substances

  • Antigens, Nuclear
  • DNA-Binding Proteins
  • LIG4 protein, human
  • Nuclear Proteins
  • RAD54B protein, human
  • Telomeric Repeat Binding Protein 2
  • DNA Helicases
  • Xrcc6 protein, human
  • Ku Autoantigen
  • DNA Ligases
  • DNA Ligase ATP